Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GYK50_RS00410 Genome accession   NZ_CP048752
Coordinates   92092..93678 (+) Length   528 a.a.
NCBI ID   WP_186475355.1    Uniprot ID   -
Organism   Psychrobacter pacificensis strain WSY-P01     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 87092..98678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYK50_RS00390 (GYK50_00390) - 87812..88351 (+) 540 WP_186475351.1 porin family protein -
  GYK50_RS00395 (GYK50_00395) - 88557..89171 (+) 615 WP_186475352.1 NfeD family protein -
  GYK50_RS00400 (GYK50_00400) - 89264..90145 (+) 882 WP_186475353.1 SPFH/Band 7/PHB domain protein -
  GYK50_RS00405 (GYK50_00405) hemN 90223..91794 (-) 1572 WP_212564069.1 oxygen-independent coproporphyrinogen III oxidase -
  GYK50_RS00410 (GYK50_00410) comM 92092..93678 (+) 1587 WP_186475355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GYK50_RS00415 (GYK50_00415) - 93728..94411 (-) 684 WP_186475356.1 phosphoglycolate phosphatase -
  GYK50_RS00420 (GYK50_00420) - 94652..95143 (-) 492 WP_212564070.1 DUF4385 family protein -
  GYK50_RS00430 (GYK50_00430) - 95536..95958 (-) 423 WP_071002690.1 hypothetical protein -
  GYK50_RS00435 (GYK50_00435) hisB 96358..97005 (+) 648 WP_212564071.1 imidazoleglycerol-phosphate dehydratase HisB -
  GYK50_RS00440 (GYK50_00440) hisH 97178..97813 (+) 636 WP_212564072.1 imidazole glycerol phosphate synthase subunit HisH -
  GYK50_RS00445 (GYK50_00445) - 97984..98361 (+) 378 WP_212564073.1 hypothetical protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 56926.72 Da        Isoelectric Point: 7.1824

>NTDB_id=422617 GYK50_RS00410 WP_186475355.1 92092..93678(+) (comM) [Psychrobacter pacificensis strain WSY-P01]
MSFAQVYTRSVVGLHAPKVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQLEPEVLSGFEFIGELALNGELRQVTGSLAVARAIKAEGLASTLSKTLSKASDSVKNEQHVTLQSA
PQLIVPIDNGREASRVDGVTILAAKSLKAVCNHLQSLADPSGSYDCLEVVTPSPAPQHVGYQVDLADVKGQHHARRALEI
AAAGGHSLLFTGPPGSGKTLMASRLPTILPDLSDEDALEVASTYSVADSDYDYGTRPFRQVHHTISAVALVGGGSRPKPG
EITLANKGVLFLDELPEFDRSVLEVLRQPLEAKQITISRANSQMTFPANFQLVAAMNPCPCGYDGDTSGRCRCRPEQIKR
YQDKLSGPLLDRIDLHITVPALPIADLQSAQAGETSKQVRERVAAAHQHQLKRQQKVNNELSPSEIDEYIKLGDSEKQLL
QLAQQRLNLSARGYHRVLRVARTIADLANSTDINSAHVSEALSYRSKE

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=422617 GYK50_RS00410 WP_186475355.1 92092..93678(+) (comM) [Psychrobacter pacificensis strain WSY-P01]
ATGTCGTTTGCTCAAGTCTATACTCGCTCAGTTGTCGGTTTGCATGCACCTAAAGTCATCATCGAAGTTCACTTATCGCA
AGGGTTACCAGCACTAACCATCGTTGGTCTACCTGAAGCGGCCGTGCGCGAGAGTAAAGACAGAGTACGCTCTGCCATTC
TTAATTCAGGTTTTCAGTTTCCCAATCGGCGTCTAACGATTAATTTAGCACCCGCTGATTTACCTAAAGATGGCGCGCGT
CTTGACTTGCCGATAGCCATTGGTATATTGGCGGCAAGCGGACAACTTGAGCCAGAAGTATTATCAGGGTTTGAGTTTAT
TGGCGAGTTGGCACTCAACGGTGAGCTGCGTCAGGTGACCGGTAGCTTGGCTGTCGCTCGCGCGATTAAGGCAGAAGGAT
TGGCATCAACGTTGTCGAAAACGTTGTCAAAGGCGAGTGACTCTGTAAAAAATGAGCAACATGTTACCTTACAGAGCGCA
CCACAATTAATCGTACCGATTGACAATGGTCGTGAGGCTAGCCGTGTGGATGGCGTGACGATATTGGCAGCGAAGAGTCT
AAAAGCAGTATGTAACCACTTGCAGTCACTGGCGGATCCAAGCGGATCTTATGACTGCTTGGAGGTGGTAACGCCCAGTC
CAGCACCGCAGCATGTAGGCTATCAAGTGGATTTAGCCGATGTCAAAGGACAGCACCATGCCCGCCGCGCGCTAGAGATA
GCAGCAGCTGGCGGTCATTCGTTATTGTTTACAGGGCCACCGGGTTCTGGCAAAACGCTCATGGCCTCACGTTTGCCGAC
GATATTGCCTGATCTCAGTGATGAGGATGCACTCGAGGTAGCTAGTACGTATTCAGTGGCAGACAGTGATTACGATTACG
GCACACGTCCCTTTAGGCAAGTGCATCACACCATATCAGCCGTGGCGTTGGTTGGCGGCGGCTCACGGCCCAAACCGGGC
GAGATTACGCTTGCTAATAAAGGGGTGTTATTCCTTGATGAGTTACCAGAGTTTGATCGGAGCGTGCTTGAAGTATTACG
CCAGCCGTTAGAAGCCAAACAAATCACTATTAGCCGTGCTAACTCGCAAATGACCTTTCCAGCCAACTTTCAATTAGTCG
CTGCGATGAATCCGTGCCCGTGTGGTTATGATGGCGATACCTCAGGGCGCTGCCGCTGTCGACCTGAGCAAATCAAACGC
TATCAAGACAAACTCTCAGGGCCACTATTAGATCGTATTGATTTGCATATTACCGTACCAGCATTGCCGATTGCTGATTT
GCAAAGCGCGCAGGCAGGAGAAACATCCAAACAAGTACGCGAGCGAGTAGCAGCCGCGCATCAGCATCAATTAAAACGAC
AACAAAAAGTCAATAATGAGCTAAGCCCGAGCGAAATCGATGAATATATCAAATTAGGCGACAGCGAAAAACAACTATTG
CAACTTGCTCAGCAGCGCTTGAATTTATCCGCACGCGGCTACCATCGAGTGTTACGAGTCGCGCGTACTATCGCGGACTT
GGCCAACAGTACAGATATTAACAGCGCCCATGTGTCAGAGGCGCTCAGCTATCGTAGTAAGGAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(224-424)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-525)

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.341

100

0.496
  comM Glaesserella parasuis strain SC1401

48.127

100

0.487
  comM Vibrio campbellii strain DS40M4

48.03

100

0.485
  comM Vibrio cholerae strain A1552

47.556

100

0.479
  comM Legionella pneumophila str. Paris

46.792

100

0.47
  comM Legionella pneumophila strain ERS1305867

46.792

100

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.026

100

0.424

Multiple sequence alignment