Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G3U99_RS06585 Genome accession   NZ_CP048693
Coordinates   1355625..1356839 (-) Length   404 a.a.
NCBI ID   WP_031343345.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350625..1361839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS06545 (G3U99_06520) rpsP 1350838..1351086 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  G3U99_RS06550 (G3U99_06525) rimM 1351116..1351664 (+) 549 WP_031343344.1 ribosome maturation factor RimM -
  G3U99_RS06555 (G3U99_06530) trmD 1351692..1352435 (+) 744 WP_021458282.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  G3U99_RS06560 (G3U99_06535) rplS 1352477..1352830 (+) 354 WP_006958143.1 50S ribosomal protein L19 -
  G3U99_RS06565 (G3U99_06540) yacG 1353076..1353270 (-) 195 WP_019277521.1 DNA gyrase inhibitor YacG -
  G3U99_RS06570 (G3U99_06545) zapD 1353322..1354062 (-) 741 WP_021458283.1 cell division protein ZapD -
  G3U99_RS06575 (G3U99_06550) coaE 1354096..1354704 (-) 609 WP_021458284.1 dephospho-CoA kinase -
  G3U99_RS06580 (G3U99_06555) pilD 1354706..1355575 (-) 870 WP_021458285.1 prepilin peptidase Machinery gene
  G3U99_RS06585 (G3U99_06560) pilC 1355625..1356839 (-) 1215 WP_031343345.1 type II secretion system F family protein Machinery gene
  G3U99_RS06590 (G3U99_06565) pilB 1356848..1358494 (-) 1647 WP_165579506.1 type IV-A pilus assembly ATPase PilB Machinery gene
  G3U99_RS06595 (G3U99_06570) - 1358497..1358937 (-) 441 WP_031343346.1 pilin -
  G3U99_RS06600 (G3U99_06575) nadC 1359165..1360052 (-) 888 WP_021458291.1 carboxylating nicotinate-nucleotide diphosphorylase -
  G3U99_RS06605 (G3U99_06580) ampD 1360184..1360729 (+) 546 WP_006958131.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  G3U99_RS06610 (G3U99_06585) fldB 1360857..1361378 (-) 522 WP_031343347.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 45446.26 Da        Isoelectric Point: 10.1547

>NTDB_id=422399 G3U99_RS06585 WP_031343345.1 1355625..1356839(-) (pilC) [Vibrio coralliilyticus OCN008]
MKVKLRLYKWQGMNTSGARVRGKMLAMCEAQVIDQLNEHNVQVRLIHHRSPSSYQRMKHRIKASDITRFTRQWSTMLMSG
LNITTSLKLIAKNTHCAEMKSALWLIQQQLQSGQSVSQSLKQSSRYFDCLYLDIVRVGEQTGRLSESLERIASYREKSEQ
LKAKVLRAAIYPSIVVMTALIVAFLMLTQVIPEFESMFGGYGAQLPWFTQQVLALSQTTQHHSIHLTIGILLAALSITLG
YRCSSRFRFWLDEIKTHLPIVGNVLVKASLARFSHTLAISLNSGLPIISSLNIAARTTDNRHYQRIIEQVTQQVSTGVTL
NAAMRRSGNIPELLLQMIMIGEESGQLDKMLNQIANQYEAEVESVIENLGKAIEPMLILLLGGLVGSLVIAMYLPIFNLM
NIMG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=422399 G3U99_RS06585 WP_031343345.1 1355625..1356839(-) (pilC) [Vibrio coralliilyticus OCN008]
ATGAAAGTCAAATTGAGACTGTACAAATGGCAAGGTATGAACACATCAGGTGCTCGGGTTAGAGGGAAAATGTTGGCAAT
GTGTGAAGCGCAGGTGATTGACCAACTTAATGAACACAACGTTCAAGTACGTCTCATTCATCATCGTTCTCCTTCCAGCT
ATCAGCGAATGAAGCACCGCATAAAAGCCAGTGACATCACCCGATTCACTCGTCAATGGTCAACGATGCTAATGTCCGGC
TTGAACATTACTACATCGCTTAAACTGATTGCGAAAAACACTCATTGTGCTGAAATGAAATCCGCCCTGTGGCTTATTCA
GCAACAACTCCAATCTGGTCAATCTGTTTCACAGTCTCTCAAGCAATCATCTCGATATTTTGATTGTCTTTACTTAGATA
TTGTTCGAGTGGGGGAACAGACAGGTCGCCTTTCCGAATCCCTGGAACGGATTGCGAGCTATCGAGAAAAGTCAGAGCAG
CTCAAGGCCAAAGTCCTGCGTGCCGCTATATACCCCAGCATAGTGGTCATGACGGCGTTAATTGTCGCATTCTTAATGCT
CACCCAAGTTATTCCTGAATTTGAGAGCATGTTTGGCGGATACGGGGCACAGCTGCCTTGGTTCACTCAGCAAGTGCTGG
CTTTATCTCAGACAACGCAACATCACAGCATCCATCTCACGATAGGCATTCTTCTCGCAGCCCTGAGCATTACGCTTGGT
TATCGCTGTTCGAGTCGCTTTCGCTTTTGGCTTGATGAAATCAAAACCCACTTACCGATTGTTGGCAATGTGCTAGTGAA
AGCTTCGTTAGCTCGCTTCAGTCATACGCTTGCTATTAGCCTGAACTCTGGATTACCCATCATTTCAAGCTTAAATATCG
CGGCACGTACCACTGATAACCGTCACTATCAGCGAATCATCGAACAAGTCACACAGCAGGTAAGCACTGGAGTTACATTG
AATGCGGCAATGCGTAGGTCAGGCAACATTCCCGAGCTTCTATTGCAAATGATCATGATAGGGGAAGAGTCCGGTCAACT
TGACAAGATGCTCAACCAAATCGCCAATCAATATGAAGCAGAGGTTGAGTCTGTCATCGAGAATCTGGGCAAAGCTATCG
AGCCCATGCTCATCCTGCTACTTGGCGGGTTGGTGGGAAGTTTGGTGATCGCTATGTATCTGCCTATCTTTAACTTAATG
AACATTATGGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

48.5

99.01

0.48
  pilC Vibrio campbellii strain DS40M4

46.384

99.257

0.46
  pilC Pseudomonas stutzeri DSM 10701

36.409

99.257

0.361

Multiple sequence alignment