Detailed information NTG0422398

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G3U99_RS06580
• Genome accession: NZ_CP048693
• Coordinates: 1354706..1355575 (-)
• Length: 289 a.a.
• NCBI ID: WP_021458285.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus OCN008
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1349706..1360575

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3U99_RS06545 (G3U99_06520)	rpsP	1350838..1351086 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
G3U99_RS06550 (G3U99_06525)	rimM	1351116..1351664 (+)	549	WP_031343344.1	ribosome maturation factor RimM	-
G3U99_RS06555 (G3U99_06530)	trmD	1351692..1352435 (+)	744	WP_021458282.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
G3U99_RS06560 (G3U99_06535)	rplS	1352477..1352830 (+)	354	WP_006958143.1	50S ribosomal protein L19	-
G3U99_RS06565 (G3U99_06540)	yacG	1353076..1353270 (-)	195	WP_019277521.1	DNA gyrase inhibitor YacG	-
G3U99_RS06570 (G3U99_06545)	zapD	1353322..1354062 (-)	741	WP_021458283.1	cell division protein ZapD	-
G3U99_RS06575 (G3U99_06550)	coaE	1354096..1354704 (-)	609	WP_021458284.1	dephospho-CoA kinase	-
G3U99_RS06580 (G3U99_06555)	pilD	1354706..1355575 (-)	870	WP_021458285.1	prepilin peptidase	Machinery gene
G3U99_RS06585 (G3U99_06560)	pilC	1355625..1356839 (-)	1215	WP_031343345.1	type II secretion system F family protein	Machinery gene
G3U99_RS06590 (G3U99_06565)	pilB	1356848..1358494 (-)	1647	WP_165579506.1	type IV-A pilus assembly ATPase PilB	Machinery gene
G3U99_RS06595 (G3U99_06570)	-	1358497..1358937 (-)	441	WP_031343346.1	pilin	-
G3U99_RS06600 (G3U99_06575)	nadC	1359165..1360052 (-)	888	WP_021458291.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32499.41 Da
• Isoelectric Point: 5.2317

>NTDB_id=422398 G3U99_RS06580 WP_021458285.1 1354706..1355575(-) (pilD) [Vibrio coralliilyticus OCN008]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMELEWRHECAESFPEYGIEPPQGTYNLSIPRSTCPSCKTQIRNL
DNIPVVSWLLLRGKCRTCQAKISPRYPLVELLSGAMSFAIAYQFELSAFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=422398 G3U99_RS06580 WP_021458285.1 1354706..1355575(-) (pilD) [Vibrio coralliilyticus OCN008]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTGATCCACCGTTTACCACAAATGATGGAGCTAGAGTGGCGACACGAGTGTGCTGAAAGCTTCCCAGAATACGGTA
TCGAGCCTCCACAAGGCACCTATAACCTCAGTATTCCTCGCTCCACCTGCCCAAGCTGTAAAACGCAAATCCGTAATCTC
GACAATATCCCGGTAGTTAGCTGGCTGCTTTTGCGTGGTAAATGTCGTACCTGTCAGGCAAAAATTAGCCCTCGCTATCC
GTTGGTTGAGTTGCTGTCAGGTGCAATGAGCTTTGCTATTGCTTATCAGTTTGAACTGAGCGCTTTTGCCATCGCCCTAC
TGTTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTCATTTGGTCGGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTCTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
TGGTTATTTATGTTTATGGTCTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTAGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCCTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.471	100	0.765
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	50.923	93.772	0.478
pilD	Acinetobacter nosocomialis M2	50.923	93.772	0.478
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474