Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G3U99_RS05870 | Genome accession | NZ_CP048693 |
| Coordinates | 1227921..1228469 (+) | Length | 182 a.a. |
| NCBI ID | WP_006958299.1 | Uniprot ID | A0A097QHM9 |
| Organism | Vibrio coralliilyticus OCN008 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1222921..1233469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3U99_RS05855 (G3U99_05840) | uvrA | 1223040..1225862 (-) | 2823 | WP_021456091.1 | excinuclease ABC subunit UvrA | - |
| G3U99_RS05860 (G3U99_05845) | galU | 1226002..1226874 (-) | 873 | WP_021456092.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| G3U99_RS05865 (G3U99_05850) | qstR | 1226992..1227639 (-) | 648 | WP_019277294.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| G3U99_RS05870 (G3U99_05855) | ssb | 1227921..1228469 (+) | 549 | WP_006958299.1 | single-stranded DNA-binding protein | Machinery gene |
| G3U99_RS05875 (G3U99_05860) | csrD | 1228617..1230632 (+) | 2016 | WP_021456093.1 | RNase E specificity factor CsrD | - |
| G3U99_RS05880 (G3U99_05865) | - | 1230629..1232068 (+) | 1440 | WP_021456094.1 | MSHA biogenesis protein MshI | - |
| G3U99_RS05885 (G3U99_05870) | gspM | 1232068..1232718 (+) | 651 | WP_021456095.1 | type II secretion system protein GspM | - |
| G3U99_RS05890 (G3U99_05875) | - | 1232711..1233034 (+) | 324 | WP_021456096.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20140.20 Da Isoelectric Point: 4.9269
>NTDB_id=422393 G3U99_RS05870 WP_006958299.1 1227921..1228469(+) (ssb) [Vibrio coralliilyticus OCN008]
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGSDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPGQSMGQPQQQGGWGQPQQPAMQQSQPAQAQQPYSQPQ
QQNQNQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=422393 G3U99_RS05870 WP_006958299.1 1227921..1228469(+) (ssb) [Vibrio coralliilyticus OCN008]
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTATTTGGCAAGCTGGCTGAAGTCGCTGGTGAGTACTTACGTAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
TAATGGTGTTATGCAGATGCTAGGCGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAGCCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
ATGGCGAGCCGTGGAGTCAACAAAGTTATTTTAGTCGGTAATCTGGGATCAGATCCGGAAGTACGTTATATGCCAAGCGG
TGGCGCTGTAGCAAACATCACGATTGCGACGTCTGAAAGCTGGCGTGATAAAGCAACAGGTGAGCAACGCGAAAAAACAG
AGTGGCACCGTGTATCTCTATTTGGCAAGCTGGCTGAAGTCGCTGGTGAGTACTTACGTAAAGGTTCTCAGGTTTATATT
GAAGGTCAACTGCAGACACGTAAATGGCAAGACCAGAATGGTCAGGACCGCTATAGCACTGAAGTTGTGGTTCAAGGGTT
TAATGGTGTTATGCAGATGCTAGGCGGTCGTGCTCAAGGTGGCGCACCGGGTCAATCAATGGGCCAGCCTCAGCAGCAAG
GTGGTTGGGGTCAACCTCAGCAGCCAGCAATGCAACAAAGCCAACCTGCTCAGGCTCAGCAACCATACTCTCAGCCTCAA
CAGCAGAACCAAAATCAGCCTCAGTATAATGAGCCACCAATGGATTTTGATGACGATATCCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.978 |
100 |
0.819 |
| ssb | Glaesserella parasuis strain SC1401 |
55.44 |
100 |
0.588 |
| ssb | Neisseria meningitidis MC58 |
44.865 |
100 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
45.604 |
100 |
0.456 |