Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   G3U99_RS05865 Genome accession   NZ_CP048693
Coordinates   1226992..1227639 (-) Length   215 a.a.
NCBI ID   WP_019277294.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221992..1232639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS05855 (G3U99_05840) uvrA 1223040..1225862 (-) 2823 WP_021456091.1 excinuclease ABC subunit UvrA -
  G3U99_RS05860 (G3U99_05845) galU 1226002..1226874 (-) 873 WP_021456092.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  G3U99_RS05865 (G3U99_05850) qstR 1226992..1227639 (-) 648 WP_019277294.1 LuxR C-terminal-related transcriptional regulator Regulator
  G3U99_RS05870 (G3U99_05855) ssb 1227921..1228469 (+) 549 WP_006958299.1 single-stranded DNA-binding protein Machinery gene
  G3U99_RS05875 (G3U99_05860) csrD 1228617..1230632 (+) 2016 WP_021456093.1 RNase E specificity factor CsrD -
  G3U99_RS05880 (G3U99_05865) - 1230629..1232068 (+) 1440 WP_021456094.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25003.94 Da        Isoelectric Point: 7.8334

>NTDB_id=422392 G3U99_RS05865 WP_019277294.1 1226992..1227639(-) (qstR) [Vibrio coralliilyticus OCN008]
MTKNIYTRTIYFLCEDSSESNHFIHQVEKQLGIDIPHIEPNELMLAMQQHKHKILMIDHDNYKKLNNQIRDLPLSNKMFE
TIIFNVEKRLTTEELLCFGNLKGLFYQDDSIEAIAKGCGEIINSQNWLPRKVAAQLLHYYRHVVLSQTAPATVDLTSREI
QILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQHMLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=422392 G3U99_RS05865 WP_019277294.1 1226992..1227639(-) (qstR) [Vibrio coralliilyticus OCN008]
ATGACTAAAAACATCTATACCAGAACCATCTACTTTCTCTGTGAAGACAGCTCCGAAAGCAACCACTTTATTCACCAAGT
CGAGAAACAGCTTGGTATTGATATTCCCCATATTGAGCCGAACGAGCTGATGCTTGCCATGCAACAACATAAGCATAAGA
TTTTGATGATTGATCATGACAACTACAAAAAGCTCAATAATCAAATCCGTGACTTGCCTCTATCGAACAAAATGTTTGAA
ACCATCATTTTTAATGTAGAAAAAAGACTCACAACTGAAGAGCTATTGTGCTTCGGCAACTTAAAAGGATTGTTTTATCA
AGATGACTCGATTGAAGCCATCGCCAAAGGTTGTGGTGAGATCATCAACAGTCAAAACTGGTTACCCCGCAAAGTCGCGG
CTCAGCTACTGCATTATTATCGTCACGTCGTGCTTAGCCAAACTGCGCCAGCCACCGTGGATTTAACCTCGCGTGAAATT
CAAATTCTACGCTGTTTAAAAACTGGGGCATCCAATATGCAGATCGCAGAAGATCTGTTTATTAGTGAGTTTACCGTTAA
GTCCCACCTTTATCAGATCTTCAAAAAGCTGTCGGTTAAGAATCGTGTCCAAGCAATCGCTTGGGCCAATCAGCATATGC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

60.28

99.535

0.6
  qstR Vibrio campbellii strain DS40M4

59.07

100

0.591
  qstR Vibrio parahaemolyticus RIMD 2210633

57.674

100

0.577

Multiple sequence alignment