Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G3U99_RS04000 Genome accession   NZ_CP048693
Coordinates   849987..851510 (-) Length   507 a.a.
NCBI ID   WP_165579468.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 844987..856510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS03980 (G3U99_03965) - 846207..847193 (+) 987 WP_021456910.1 serine/threonine protein kinase -
  G3U99_RS03985 (G3U99_03970) - 847224..847844 (+) 621 WP_006957502.1 thiol:disulfide interchange protein DsbA/DsbL -
  G3U99_RS03990 (G3U99_03975) - 847900..848784 (-) 885 WP_006957501.1 acyltransferase -
  G3U99_RS03995 (G3U99_03980) - 848968..849954 (+) 987 WP_021456909.1 DUF2860 domain-containing protein -
  G3U99_RS04000 (G3U99_03985) comM 849987..851510 (-) 1524 WP_165579468.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G3U99_RS04005 (G3U99_03990) ilvG 852015..853661 (+) 1647 WP_021456907.1 acetolactate synthase 2 catalytic subunit -
  G3U99_RS04010 (G3U99_03995) ilvM 853663..853947 (+) 285 WP_006957495.1 acetolactate synthase 2 small subunit -
  G3U99_RS04015 (G3U99_04000) ilvE 853960..854904 (+) 945 WP_019273987.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55089.18 Da        Isoelectric Point: 7.3098

>NTDB_id=422387 G3U99_RS04000 WP_165579468.1 849987..851510(-) (comM) [Vibrio coralliilyticus OCN008]
MGLAIIYSRASVGVEAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGC
FDLPIALGILAASEQIPVSGLAEKEFVGELALSGELRGVKGVLPAALAANKAQRSLVVPHYNGDQAALVGEEQHKSAQSL
LEVCADLCGQQKLSLHQTQNLHRAVDNGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINALNWKRRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQTILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTEVVKQRVLNARVCMLERSNKVNALLGSREIEEYCPLKKEDAQFLESALHRLGLSIRAYHRIIKVARTIADLDGQSQ
IARHHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=422387 G3U99_RS04000 WP_165579468.1 849987..851510(-) (comM) [Vibrio coralliilyticus OCN008]
ATGGGTTTAGCCATTATTTACAGTCGGGCATCGGTGGGGGTTGAAGCGCCACCTGTGACGGTAGAAGTGCATATCAGTAA
TGGAATGCCGGGGTTCACTCTGGTGGGATTACCGGAAACCACGGTCAAAGAGTCACGTGACCGAGTGCGCAGCGCGATCA
TCAACTCTCGATTTGAGTTCCCAGCCAAGCGAATCACAGTCAATCTTGCACCTGCCGATCTGCCCAAGGAGGGAGGGTGC
TTTGATTTGCCGATTGCACTTGGCATTCTCGCTGCTTCAGAGCAGATTCCAGTCAGCGGTTTGGCGGAAAAAGAATTCGT
TGGTGAGCTGGCTTTGTCGGGGGAACTGCGAGGAGTGAAAGGGGTATTGCCTGCAGCGCTGGCAGCCAACAAAGCACAGC
GAAGCTTGGTTGTGCCTCATTACAACGGAGATCAAGCCGCGTTAGTGGGCGAAGAACAGCATAAATCTGCCCAAAGCTTA
CTGGAAGTGTGCGCCGATCTTTGCGGCCAACAAAAGCTTAGCCTGCATCAAACACAAAATCTGCACCGAGCGGTGGATAA
TGGCCGCGACTTGCAAGACATCATTGGTCAGCAGCAAGGTAAACGTGCTTTGGAGATTGCCGCGGCAGGTAACCACAACT
TGTTATTTTTAGGCCCGCCTGGGACGGGGAAAACCATGCTCGCCTCGCGTTTGTGCGATTTGCTGCCGGAAATGAGTGAC
GACGAAGCAATGGAAACTGCATCTGTTGCGTCGCTGACTCAGCAGGAGATTAATGCGCTTAACTGGAAGCGGCGCCCCTT
TCGTGCACCGCACCATTCAAGTTCAATGGCAGCGCTCGTCGGCGGAGGCACAATCCCAAGGCCGGGTGAAATTTCTTTGG
CGCACAATGGGTTGCTGTTTCTTGATGAAATGCCAGAGTTTGAACGTAAGGTGCTTGACTCATTGCGTGAGCCACTGGAA
TCCGGGGAGATTATTATCTCGCGTGCTCAGGGCAAAACTCGTTTCCCTGCACGCTTTCAGCTGGTGGGCGCCCTTAACCC
GAGTCCGACGGGGTATTACGAAGGTAATCAGTCGAGAGTGAATCCACAAACCATTTTACGTTATCTGAGTCGGTTATCTG
GCCCTCTACTGGATCGTTTTGATATGTCACTTGAGATCCCAGCGTTACCTAAAGGTACTTTGGCCGAAGGGGGCGATCGT
GGTGAACCTACAGAAGTAGTTAAGCAAAGGGTCCTCAATGCCAGAGTCTGTATGCTGGAGCGCTCCAATAAGGTTAATGC
ACTGTTAGGCAGTCGCGAAATAGAGGAGTACTGTCCATTGAAAAAAGAAGATGCGCAGTTTTTGGAGAGTGCGCTGCACC
GACTTGGGTTGTCAATTCGGGCTTATCACCGAATCATCAAGGTCGCGCGCACCATTGCTGATTTAGATGGTCAGTCGCAG
ATTGCTCGCCATCATCTGGCTGAAGCGTTGGGATATCGGGCAATGGACCGATTGCTTAAGCAATTGACCGCTCAGGCGGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

86.982

100

0.87
  comM Vibrio campbellii strain DS40M4

86.391

100

0.864
  comM Haemophilus influenzae Rd KW20

66.667

100

0.667
  comM Glaesserella parasuis strain SC1401

64.327

100

0.651
  comM Legionella pneumophila str. Paris

50.402

98.225

0.495
  comM Legionella pneumophila strain ERS1305867

50.402

98.225

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.432

Multiple sequence alignment