Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3T13_RS10715 Genome accession   NZ_CP048686
Coordinates   2153249..2153758 (+) Length   169 a.a.
NCBI ID   WP_061775366.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2148249..2158758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS10695 - 2151253..2151906 (+) 654 WP_061775363.1 hypothetical protein -
  G3T13_RS10700 - 2151917..2152264 (+) 348 WP_144259908.1 hypothetical protein -
  G3T13_RS10705 - 2152406..2152717 (+) 312 WP_061775364.1 hypothetical protein -
  G3T13_RS10710 rpsF 2152913..2153212 (+) 300 WP_061775365.1 30S ribosomal protein S6 -
  G3T13_RS10715 ssb 2153249..2153758 (+) 510 WP_061775366.1 single-stranded DNA-binding protein Machinery gene
  G3T13_RS10720 rpsR 2153807..2154052 (+) 246 WP_003140392.1 30S ribosomal protein S18 -
  G3T13_RS10725 - 2154227..2154538 (-) 312 WP_061775367.1 DUF960 domain-containing protein -
  G3T13_RS10730 - 2154704..2155417 (+) 714 WP_061775368.1 pseudouridine synthase -
  G3T13_RS10735 recX 2155444..2156238 (-) 795 WP_061775369.1 recombination regulator RecX -
  G3T13_RS10740 rlmD 2156275..2157612 (+) 1338 WP_061775370.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  G3T13_RS10745 - 2157609..2158106 (+) 498 WP_061775371.1 GNAT family N-acetyltransferase -
  G3T13_RS10750 - 2158150..2158404 (+) 255 WP_061775372.1 DUF1912 family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18373.19 Da        Isoelectric Point: 4.8895

>NTDB_id=422303 G3T13_RS10715 WP_061775366.1 2153249..2153758(+) (ssb) [Lactococcus raffinolactis strain KACC 13441]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRAFKNANGEREADFINVVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENAQGQRVYVTEVVADNFQMLESRSAREGGQQGGGYTPSQSQPTNSNFGGNQPSQTQSSPATPDFGRDSDPFSGGTPM
NLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=422303 G3T13_RS10715 WP_061775366.1 2153249..2153758(+) (ssb) [Lactococcus raffinolactis strain KACC 13441]
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTTCGTTACACACCTGCCAATCAAGCAGTGGC
TACTTTTACCCTTGCGGTTAATCGTGCCTTCAAGAATGCTAATGGTGAGCGTGAAGCGGATTTCATTAATGTTGTCATCT
GGCGTCAAGCTGCAGAAAATCTAGCAAATTGGGCGAAAAAAGGTGCGCTTCTGGGCGTTACTGGTCGTATCCAAACGCGT
AATTATGAGAATGCCCAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGATAATTTCCAAATGTTAGAAAGTCGTAG
CGCGCGCGAAGGTGGTCAACAAGGTGGTGGTTACACACCTTCACAGTCTCAACCTACAAACTCAAACTTCGGTGGCAATC
AACCGTCACAAACTCAGAGCTCACCTGCCACTCCAGACTTTGGCCGCGATAGCGATCCGTTTTCTGGTGGCACACCCATG
AACTTGAGTGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.429

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.114

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379
  ssb Vibrio cholerae strain A1552

34.239

100

0.373
  ssb Glaesserella parasuis strain SC1401

32.632

100

0.367

Multiple sequence alignment