Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | PARA_RS01530 | Genome accession | NC_015964 |
| Coordinates | 308389..308739 (-) | Length | 116 a.a. |
| NCBI ID | WP_014064231.1 | Uniprot ID | A0AB33QJ37 |
| Organism | Haemophilus parainfluenzae T3T1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 303389..313739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PARA_RS01510 (PARA_03040) | - | 303527..304030 (-) | 504 | WP_014064227.1 | surface-adhesin E family protein | - |
| PARA_RS01515 (PARA_03050) | pflA | 304085..304825 (-) | 741 | WP_014064228.1 | pyruvate formate lyase 1-activating protein | - |
| PARA_RS01520 (PARA_03060) | pflB | 304954..307266 (-) | 2313 | WP_014064229.1 | formate C-acetyltransferase | - |
| PARA_RS01525 (PARA_03070) | focA | 307320..308174 (-) | 855 | WP_014064230.1 | formate transporter FocA | - |
| PARA_RS01530 (PARA_03080) | comE1/comEA | 308389..308739 (-) | 351 | WP_014064231.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| PARA_RS01535 (PARA_03090) | - | 308884..309201 (-) | 318 | WP_014064232.1 | heavy metal-binding domain-containing protein | - |
| PARA_RS01540 (PARA_03100) | rdgB | 309240..309839 (-) | 600 | WP_014064233.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| PARA_RS01545 (PARA_03110) | - | 309971..310342 (+) | 372 | WP_014064234.1 | DUF305 domain-containing protein | - |
| PARA_RS01550 (PARA_03120) | ispH | 310391..311335 (-) | 945 | WP_014064235.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| PARA_RS01555 (PARA_03130) | lspA | 311332..311823 (-) | 492 | WP_014064236.1 | signal peptidase II | - |
| PARA_RS01560 (PARA_03140) | glmU | 311940..313310 (-) | 1371 | WP_014064237.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
Sequence
Protein
Download Length: 116 a.a. Molecular weight: 12780.63 Da Isoelectric Point: 9.6912
>NTDB_id=42229 PARA_RS01530 WP_014064231.1 308389..308739(-) (comE1/comEA) [Haemophilus parainfluenzae T3T1]
MKLMKHLFSSLFVATTMLSSQVFAEDKVAEQAQPQVQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIAF
MKLMKHLFSSLFVATTMLSSQVFAEDKVAEQAQPQVQVQQQTASQTTQQAVSDKLNINTASASEIQKALIGIGAKKAEAI
VQYREKHGNFTMAEQLLEVQGIGKATLEKNRDRIAF
Nucleotide
Download Length: 351 bp
>NTDB_id=42229 PARA_RS01530 WP_014064231.1 308389..308739(-) (comE1/comEA) [Haemophilus parainfluenzae T3T1]
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCAACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGATAA
GGTGGCTGAACAGGCTCAACCTCAAGTGCAAGTTCAGCAACAAACCGCATCACAAACTACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGTGCATCAGAAATTCAAAAAGCGCTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTGCAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGTATTGGTAAAGCAACCTT
AGAGAAAAATCGCGATCGTATTGCGTTTTAA
ATGAAATTGATGAAACATTTATTTAGTTCATTATTTGTTGCAACCACAATGTTGAGCTCGCAAGTGTTTGCAGAAGATAA
GGTGGCTGAACAGGCTCAACCTCAAGTGCAAGTTCAGCAACAAACCGCATCACAAACTACACAACAAGCAGTGAGTGATA
AATTAAATATCAATACCGCCAGTGCATCAGAAATTCAAAAAGCGCTAATTGGTATTGGTGCGAAAAAGGCGGAAGCCATT
GTGCAGTATCGTGAAAAGCACGGTAATTTCACTATGGCAGAACAATTGCTTGAAGTACAAGGTATTGGTAAAGCAACCTT
AGAGAAAAATCGCGATCGTATTGCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
66.372 |
97.414 |
0.647 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.752 |
97.414 |
0.543 |
| comEA | Acinetobacter baylyi ADP1 |
38.583 |
100 |
0.422 |
| comEA | Vibrio cholerae C6706 |
41.667 |
93.103 |
0.388 |
| comEA | Vibrio cholerae strain A1552 |
41.667 |
93.103 |
0.388 |