Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   G3T13_RS05190 Genome accession   NZ_CP048686
Coordinates   1080354..1081343 (-) Length   329 a.a.
NCBI ID   WP_061775229.1    Uniprot ID   A0AAE6YMW8
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1075354..1086343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS05175 pepF 1075951..1077747 (-) 1797 WP_061775231.1 oligoendopeptidase F Regulator
  G3T13_RS05180 mmuM 1077896..1078813 (-) 918 WP_061775230.1 homocysteine S-methyltransferase -
  G3T13_RS05185 - 1078791..1080182 (-) 1392 WP_373279979.1 amino acid permease -
  G3T13_RS05190 coiA 1080354..1081343 (-) 990 WP_061775229.1 competence protein CoiA Machinery gene
  G3T13_RS05195 - 1081420..1082385 (-) 966 WP_061775228.1 Gfo/Idh/MocA family protein -
  G3T13_RS05200 - 1082517..1083137 (-) 621 WP_239519167.1 C40 family peptidase -
  G3T13_RS05205 - 1083251..1084882 (-) 1632 WP_061775239.1 formate--tetrahydrofolate ligase -
  G3T13_RS05210 - 1085102..1085590 (-) 489 WP_061775226.1 MepB family protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 38717.29 Da        Isoelectric Point: 6.9897

>NTDB_id=422276 G3T13_RS05190 WP_061775229.1 1080354..1081343(-) (coiA) [Lactococcus raffinolactis strain KACC 13441]
MLVAVNEAEQIINLLEFSKSDLTELVGQFLRCPACKSQVRLKNGHVKMPHFAHVNLAACQYYSENESLQHLTLKKRLYHW
FKQTEQVKIEHFLPELQQTPDLLVNETIAIEIQCSHLSIQRLRERTETYRAHGYTVLWLMGKDLWLGQHLTQLKQQLLYL
TQNAGFYYWELDLQREKIRLNYLCHEDLIGRLHYLQREFSFDVGNLLEVLRTPFAASSAKLTDQLSQDIPAFIRSQLYYQ
NPKWLKIQEKYYQNGQNLMTFKNFPIKLYPIGLNLLTHQFEGVVEPDFCQITSDISRYYHHFLAYPQDDGVYPPGFYARA
ETGDGDCKS

Nucleotide


Download         Length: 990 bp        

>NTDB_id=422276 G3T13_RS05190 WP_061775229.1 1080354..1081343(-) (coiA) [Lactococcus raffinolactis strain KACC 13441]
ATGCTAGTTGCAGTGAATGAAGCAGAACAAATCATCAATTTACTAGAATTTAGCAAGTCGGACCTTACTGAATTGGTAGG
TCAATTTTTGCGTTGTCCTGCTTGCAAAAGTCAGGTACGCTTGAAAAATGGTCATGTAAAAATGCCCCATTTTGCTCACG
TAAATTTAGCAGCCTGTCAATATTATTCGGAGAACGAAAGCCTGCAGCACTTAACCTTAAAAAAACGTTTATATCACTGG
TTCAAGCAAACAGAGCAGGTCAAAATCGAGCATTTTTTACCTGAGTTACAGCAGACGCCTGACTTACTGGTTAATGAAAC
GATTGCGATTGAAATTCAATGCAGTCACCTGTCTATTCAGAGACTGCGTGAGCGGACAGAAACCTATCGAGCTCATGGCT
ACACCGTCCTCTGGCTCATGGGAAAGGATTTATGGTTGGGTCAGCATTTGACGCAACTCAAGCAACAGTTACTCTATTTA
ACCCAGAATGCTGGTTTTTACTATTGGGAGTTGGATTTGCAGCGTGAAAAAATCCGCCTCAACTATCTGTGCCATGAAGA
TTTAATAGGGCGTTTGCATTATTTACAGCGTGAATTTTCCTTCGATGTAGGGAATTTACTTGAGGTGCTTCGAACGCCAT
TTGCGGCAAGCTCAGCCAAATTGACTGACCAGTTATCGCAAGATATTCCAGCATTTATCAGGTCTCAGCTTTATTATCAG
AATCCCAAATGGTTGAAAATTCAAGAAAAGTATTATCAGAATGGGCAAAATTTGATGACGTTCAAAAACTTCCCTATTAA
GTTATATCCGATTGGCTTGAATCTCTTAACGCATCAGTTCGAAGGCGTTGTCGAGCCTGACTTTTGTCAAATTACAAGCG
ATATCAGTCGCTATTATCACCATTTTCTGGCTTATCCGCAGGATGATGGGGTTTATCCGCCGGGATTTTATGCTAGGGCT
GAGACAGGTGATGGAGATTGTAAAAGCTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

52.174

97.872

0.511
  coiA Streptococcus mitis NCTC 12261

44.753

98.48

0.441
  coiA Streptococcus pneumoniae TIGR4

42.901

98.48

0.422
  coiA Streptococcus pneumoniae Rx1

42.901

98.48

0.422
  coiA Streptococcus pneumoniae D39

42.901

98.48

0.422
  coiA Streptococcus pneumoniae R6

42.901

98.48

0.422

Multiple sequence alignment