Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   G3T13_RS05175 Genome accession   NZ_CP048686
Coordinates   1075951..1077747 (-) Length   598 a.a.
NCBI ID   WP_061775231.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070951..1082747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS05160 - 1073492..1073992 (-) 501 WP_061775233.1 LURP-one-related/scramblase family protein -
  G3T13_RS05165 - 1074235..1075203 (-) 969 WP_239519164.1 peptidyl-prolyl cis-trans isomerase -
  G3T13_RS05170 - 1075254..1075958 (-) 705 WP_061775232.1 O-methyltransferase -
  G3T13_RS05175 pepF 1075951..1077747 (-) 1797 WP_061775231.1 oligoendopeptidase F Regulator
  G3T13_RS05180 mmuM 1077896..1078813 (-) 918 WP_061775230.1 homocysteine S-methyltransferase -
  G3T13_RS05185 - 1078791..1080182 (-) 1392 WP_373279979.1 amino acid permease -
  G3T13_RS05190 coiA 1080354..1081343 (-) 990 WP_061775229.1 competence protein CoiA Machinery gene
  G3T13_RS05195 - 1081420..1082385 (-) 966 WP_061775228.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68109.77 Da        Isoelectric Point: 4.5068

>NTDB_id=422275 G3T13_RS05175 WP_061775231.1 1075951..1077747(-) (pepF) [Lactococcus raffinolactis strain KACC 13441]
MVKKREAIDEKYKWDLTTIFATDEAFEAELAEVLTALEDARNLAGTLTDSAENLLAVTDTELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTALYAKFSEVFAFYEPEFMTLSQERFAQFVIDHPKLQTYGHFFEQLFDRKAHVLSSAEEALLAGA
SEIFGAGAETFEILDNADIVFPTIRDAQGQDVQLSHGNYISFMESSNREVRKAAYQALYSIYEQYQHTYAKTLQTNVKVH
NFTAKTRHYHSAREAALSSNHIPEAVYDTLVQAVNDHLPLLHRYIQLRSDILKIDDLKMYDVYAPLSTTDYNFTYEEAVA
KTQGTLAIFGPDYLEKVKRSFEENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRES
QPYVYGDYSIFLAEIASTTNENILTETLLHDVEDDETRFAVLNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSEF
LNQQYAELNEKYYGLAASDNPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVNGTEQDKADYLNYLRAGSSDYPL
NVIAKAGVDMTSADYLTAAFAVFEKRLTELEALVAKHG

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=422275 G3T13_RS05175 WP_061775231.1 1075951..1077747(-) (pepF) [Lactococcus raffinolactis strain KACC 13441]
ATGGTAAAAAAACGTGAAGCAATTGATGAAAAATATAAATGGGATCTGACGACAATTTTTGCAACAGATGAGGCTTTTGA
AGCGGAACTCGCAGAGGTTTTAACTGCACTAGAGGATGCTAGAAACTTAGCTGGTACCCTGACAGATTCTGCAGAAAATT
TATTAGCAGTGACTGATACGGAGTTGGCGCTCATGCAACGGGTAGAAAAGCTCTATGTCTATGCGTCAATGAAAAATGAC
CAGGATACAACGGTTAGTCTTTATCAAGAATATCAAGCAAAAGTAACAGCGCTCTATGCTAAATTTAGTGAAGTTTTTGC
CTTCTATGAACCTGAGTTTATGACTTTGTCGCAAGAAAGGTTTGCACAGTTTGTCATTGATCACCCTAAATTACAAACTT
ATGGACACTTCTTTGAGCAGTTGTTTGATAGAAAAGCCCACGTTTTGTCAAGCGCAGAAGAAGCCTTACTAGCTGGTGCA
TCAGAGATTTTTGGTGCAGGTGCTGAAACCTTTGAAATTTTAGATAATGCAGATATCGTCTTTCCAACGATTAGGGATGC
GCAAGGTCAAGACGTACAGCTGTCACATGGTAACTATATTTCATTCATGGAGTCATCGAATCGTGAGGTCAGAAAAGCGG
CCTATCAAGCACTCTATAGCATCTATGAACAATATCAGCATACCTATGCCAAGACGCTACAAACTAACGTCAAAGTCCAT
AACTTCACAGCTAAAACACGCCATTATCACTCAGCACGTGAAGCGGCTTTGTCTAGTAACCACATCCCAGAAGCGGTCTA
TGACACTTTAGTTCAAGCGGTTAATGACCACCTGCCTTTGCTTCACCGTTACATCCAACTGCGCTCTGATATCCTGAAAA
TTGATGACCTGAAAATGTATGATGTCTATGCCCCTTTGTCAACGACAGATTATAACTTTACCTATGAAGAGGCAGTTGCT
AAAACGCAAGGTACACTTGCGATTTTCGGTCCAGATTATCTGGAAAAGGTTAAACGTAGCTTTGAAGAAAATTGGATTGA
TGTTCAGGAAAATAAAGGCAAGCGCTCAGGTGCCTATTCAGGCGGTTCGTATGATACCAACGCCTTCATGCTTCTCAACT
GGCAGGATACGCTAGATAATCTCTTTACTTTGGTGCACGAGATGGGCCATAGCATGCATAGTAGCTTTACCCGCGAAAGC
CAGCCTTATGTCTACGGTGACTACAGCATCTTCCTCGCTGAAATAGCTTCGACAACTAATGAAAATATCCTCACAGAAAC
CTTGCTCCATGATGTTGAGGATGATGAGACGAGATTCGCGGTGCTCAACCACTTCTTGGATGGCTTTAGAGGCACTGTCT
TTAGACAAACGCAGTTTGCTGAGTTCGAGCATGCCATTCATGAGGCAGATGCTGCAGGAACCGTCTTAACCAGCGAGTTC
TTAAACCAACAATACGCCGAGTTAAATGAAAAATATTACGGCCTAGCTGCAAGTGATAACCCAGAAATCCAGTACGAATG
GGCTAGAATCCCACATTTCTACTACAATTACTATGTTTTCCAATATGCGACAGGTTTTGCAGCAGCATCTGCCTTGGCAG
ATAAAATCGTGAATGGAACTGAGCAAGATAAGGCAGACTATCTGAATTACTTGCGAGCTGGTTCGTCAGACTATCCGCTA
AATGTCATTGCCAAAGCAGGTGTTGATATGACGTCAGCTGATTATCTTACTGCTGCTTTTGCAGTTTTTGAAAAACGCTT
GACAGAATTAGAAGCATTGGTGGCGAAACATGGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

66.107

99.666

0.659

Multiple sequence alignment