Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   G0030_RS13435 Genome accession   NZ_CP048681
Coordinates   2844594..2845736 (+) Length   380 a.a.
NCBI ID   WP_180182472.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2839594..2850736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS13415 (G0030_13410) - 2840138..2842189 (-) 2052 WP_180182471.1 TonB-dependent copper receptor -
  G0030_RS13420 (G0030_13415) - 2842263..2842685 (-) 423 WP_016658991.1 DUF2946 family protein -
  G0030_RS13425 (G0030_13420) def 2842776..2843300 (-) 525 WP_005181462.1 peptide deformylase -
  G0030_RS13430 (G0030_13425) tsaP 2843420..2844577 (+) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  G0030_RS13435 (G0030_13430) dprA 2844594..2845736 (+) 1143 WP_180182472.1 DNA-processing protein DprA Machinery gene
  G0030_RS13440 (G0030_13435) - 2845781..2846347 (+) 567 WP_180182473.1 L-threonylcarbamoyladenylate synthase -
  G0030_RS13445 (G0030_13440) - 2846728..2847639 (-) 912 WP_005181447.1 DMT family transporter -
  G0030_RS13450 (G0030_13445) - 2847968..2848510 (+) 543 WP_005181445.1 glutathione peroxidase -
  G0030_RS13455 (G0030_13450) - 2848693..2849301 (+) 609 WP_163146337.1 hypothetical protein -
  G0030_RS13460 (G0030_13455) - 2849422..2850420 (+) 999 WP_168405856.1 pirin family protein -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42179.06 Da        Isoelectric Point: 6.9756

>NTDB_id=422258 G0030_RS13435 WP_180182472.1 2844594..2845736(+) (dprA) [Acinetobacter indicus strain Q186-3_T]
MLNTISPGHLATIRLWYLVQHSLPSFYKLIRHFGSAAAATEAGNLQRWAELGLHQNHLQRARDFHQAQAQADFQHLLQRI
QQHTDFILIPEDVGYPTQLLPYTDKPPILFGQGQAQPLLQPQVAIVGSRKASPHGRQVAYDFAYYLSEKGFFINSGLAQG
IDEAAHQGGLKHQRTIAVMGTGLDLTYPATHQGLRDQILQRHGTIISEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LDSGSLITAKLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWLSQQQATLSATASAVAHPT
LPEHLLALYSQLDWVGKNMDQLASELQQETAHLTAQLMELELLGMAMQQSGLYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=422258 G0030_RS13435 WP_180182472.1 2844594..2845736(+) (dprA) [Acinetobacter indicus strain Q186-3_T]
ATGCTGAATACGATATCACCCGGTCATCTCGCAACGATTCGCCTGTGGTATCTGGTTCAGCATTCACTCCCCAGCTTTTA
TAAATTAATCCGGCACTTCGGTTCGGCGGCTGCGGCCACCGAAGCCGGCAACCTGCAGCGCTGGGCAGAACTGGGACTGC
ATCAGAACCATCTGCAACGCGCACGGGATTTTCATCAAGCACAGGCACAAGCCGACTTCCAGCACTTGCTGCAGCGCATC
CAGCAACATACCGATTTTATTCTTATTCCCGAAGATGTCGGTTACCCCACCCAACTGCTGCCCTATACCGACAAGCCACC
GATTTTATTTGGCCAAGGACAGGCACAACCTTTACTTCAGCCACAAGTAGCAATTGTCGGCAGTCGCAAAGCCAGTCCGC
ATGGCCGGCAGGTGGCTTATGACTTTGCCTATTATTTAAGTGAAAAAGGCTTTTTTATTAACAGTGGCCTGGCGCAAGGC
ATTGATGAAGCAGCCCATCAGGGCGGCCTAAAACATCAACGTACCATTGCCGTGATGGGTACTGGTCTCGACCTCACCTA
CCCGGCCACACACCAGGGTCTGCGTGACCAGATTCTGCAACGGCATGGCACTATTATCAGTGAGTTCCTGCCACAGACCA
AACCGCTACAGCAGCATTTTCCACGGCGTAACCGCATTGTCAGTGGACTTAGCCTGGGAGTGATTGTAGCCGAAGCCACG
CTGGACAGCGGCTCGCTGATTACCGCCAAACTGGCGGCCGAGCAAGGTAAAACCGTGTTTGCCATTCCGGGACATATTTA
CAGTGAATTTCATCAGGGCTGCCATCAACTGATTCGGGAAGGCGCGATTCTGGTTGATCATCCGGAACAGGTCATTGAAG
ATCTGGCCTTGCCAACCCAATGGCTGAGCCAGCAGCAGGCGACCTTATCCGCTACAGCATCTGCAGTTGCCCACCCGACC
TTACCCGAACATCTGCTGGCCCTATACAGCCAGCTGGACTGGGTTGGTAAAAACATGGACCAGCTGGCCAGCGAACTGCA
ACAGGAAACCGCCCATTTAACCGCTCAGTTAATGGAACTGGAGCTGCTCGGGATGGCAATGCAGCAATCGGGGCTATATC
TGCGTTGTCGTCCATCACAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

69.496

99.211

0.689

  dprA Acinetobacter baumannii D1279779

69.231

99.211

0.687

  dprA Acinetobacter baylyi ADP1

64.211

100

0.642

  dprA Vibrio cholerae strain A1552

42.857

88.421

0.379


Multiple sequence alignment