Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   G0030_RS13430 Genome accession   NZ_CP048681
Coordinates   2843420..2844577 (+) Length   385 a.a.
NCBI ID   WP_016658990.1    Uniprot ID   V2UEN4
Organism   Acinetobacter indicus strain Q186-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2838420..2849577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS13415 (G0030_13410) - 2840138..2842189 (-) 2052 WP_180182471.1 TonB-dependent copper receptor -
  G0030_RS13420 (G0030_13415) - 2842263..2842685 (-) 423 WP_016658991.1 DUF2946 family protein -
  G0030_RS13425 (G0030_13420) def 2842776..2843300 (-) 525 WP_005181462.1 peptide deformylase -
  G0030_RS13430 (G0030_13425) tsaP 2843420..2844577 (+) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  G0030_RS13435 (G0030_13430) dprA 2844594..2845736 (+) 1143 WP_180182472.1 DNA-processing protein DprA Machinery gene
  G0030_RS13440 (G0030_13435) - 2845781..2846347 (+) 567 WP_180182473.1 L-threonylcarbamoyladenylate synthase -
  G0030_RS13445 (G0030_13440) - 2846728..2847639 (-) 912 WP_005181447.1 DMT family transporter -
  G0030_RS13450 (G0030_13445) - 2847968..2848510 (+) 543 WP_005181445.1 glutathione peroxidase -
  G0030_RS13455 (G0030_13450) - 2848693..2849301 (+) 609 WP_163146337.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42521.54 Da        Isoelectric Point: 8.8330

>NTDB_id=422257 G0030_RS13430 WP_016658990.1 2843420..2844577(+) (tsaP) [Acinetobacter indicus strain Q186-3_T]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=422257 G0030_RS13430 WP_016658990.1 2843420..2844577(+) (tsaP) [Acinetobacter indicus strain Q186-3_T]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACCGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCCGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGCG
TGATGGGTTCAATTGGTACCGCAGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2UEN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment