Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G0030_RS13275 Genome accession   NZ_CP048681
Coordinates   2805274..2806761 (+) Length   495 a.a.
NCBI ID   WP_180182011.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2800274..2811761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS13250 (G0030_13245) ribD 2801186..2802274 (-) 1089 WP_180182010.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  G0030_RS13255 (G0030_13250) nrdR 2802298..2802756 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  G0030_RS13260 (G0030_13255) - 2802896..2804299 (-) 1404 WP_075174920.1 ammonium transporter -
  G0030_RS13265 (G0030_13260) glnK 2804362..2804700 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  G0030_RS13270 (G0030_13265) - 2804977..2805204 (+) 228 WP_180182020.1 accessory factor UbiK family protein -
  G0030_RS13275 (G0030_13270) comM 2805274..2806761 (+) 1488 WP_180182011.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G0030_RS13280 (G0030_13275) - 2806820..2807554 (-) 735 WP_075174922.1 TorF family putative porin -
  G0030_RS13285 (G0030_13280) - 2808314..2809627 (+) 1314 WP_180182012.1 OprD family outer membrane porin -
  G0030_RS13290 (G0030_13285) ppa 2809732..2810256 (-) 525 WP_016659718.1 inorganic diphosphatase -
  G0030_RS13295 (G0030_13290) - 2810374..2810775 (-) 402 WP_180182013.1 MAPEG family protein -
  G0030_RS13300 (G0030_13295) - 2810879..2811259 (+) 381 WP_104470544.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 53992.94 Da        Isoelectric Point: 7.5671

>NTDB_id=422256 G0030_RS13275 WP_180182011.1 2805274..2806761(+) (comM) [Acinetobacter indicus strain Q186-3_T]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAADNLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTLHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=422256 G0030_RS13275 WP_180182011.1 2805274..2806761(+) (comM) [Acinetobacter indicus strain Q186-3_T]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGAGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGACTTACCCAAAGATGGCTCGCGT
CTGGATTTACCGATTGCTTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGACAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCGGCTGGTC
ATCAACTGGTATTACCGGAACCCAATGCGCAGGAAGCTGCACAACTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCGCTGCAGCCTTTTGCAGCAAGCTCGGAAACCCGTTTGGAACGCTA
TGCTTTTGATCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCACCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATACCCTGCATCGCTTTGGACAGCGGCCGTTTCGGGCCCC
ACATCATACCGCTTCAGCGATTGCACTCGTCGGTGGTGGCTCGCATCCAAAACCGGGCGAAATTACCCTGGCTCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCAATGAACCCCTGCCCGTG
TGGCTATGCATTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGCATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCGCCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.511
  comM Legionella pneumophila str. Paris

51.008

100

0.511
  comM Vibrio cholerae strain A1552

50.505

100

0.505
  comM Haemophilus influenzae Rd KW20

49.8

100

0.503
  comM Vibrio campbellii strain DS40M4

50.101

100

0.501
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.016

100

0.467

Multiple sequence alignment