Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G0029_RS14745 Genome accession   NZ_CP048670
Coordinates   3032145..3033635 (+) Length   496 a.a.
NCBI ID   WP_180039915.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3027145..3038635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS14720 (G0029_14705) ribD 3028029..3029132 (-) 1104 WP_180039919.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  G0029_RS14725 (G0029_14710) nrdR 3029169..3029627 (-) 459 WP_067763170.1 transcriptional regulator NrdR -
  G0029_RS14730 (G0029_14715) - 3029766..3031172 (-) 1407 WP_180109855.1 ammonium transporter -
  G0029_RS14735 (G0029_14720) glnK 3031234..3031572 (-) 339 WP_067763174.1 P-II family nitrogen regulator -
  G0029_RS14740 (G0029_14725) - 3031851..3032078 (+) 228 WP_078189551.1 accessory factor UbiK family protein -
  G0029_RS14745 (G0029_14730) comM 3032145..3033635 (+) 1491 WP_180039915.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G0029_RS14750 (G0029_14735) - 3033679..3034416 (-) 738 WP_180008086.1 TorF family putative porin -
  G0029_RS14755 (G0029_14740) - 3034813..3035589 (-) 777 WP_180109856.1 TorF family putative porin -
  G0029_RS14760 (G0029_14745) - 3036304..3037596 (+) 1293 WP_180102294.1 OprD family outer membrane porin -
  G0029_RS14765 (G0029_14750) ppa 3037700..3038236 (-) 537 WP_078189469.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54084.73 Da        Isoelectric Point: 7.2999

>NTDB_id=422216 G0029_RS14745 WP_180039915.1 3032145..3033635(+) (comM) [Acinetobacter sp. YH12138 strain YH12138_T]
MSFAKIYTRGLLGLNAPQIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPENAADGFEFIGELALDGYLRPVSGILSIAIACQHIGHHLILPALNADEAAQLPEFQVFPAQHL
KDVCEHLSRSALISSHPSTSSANQHSYPFDLSDVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLDM
QENLQVASIYSIAGANHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLAAHELQSSQEVE
SSSTVRHRVIQAYELQIERQQKSNMALTPTQLEQQAVLDATAQNILQLAQQRMNLSARAYHRVLRVARTIADLAQSEHIQ
AQHVSEALSYRSQLNT

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=422216 G0029_RS14745 WP_180039915.1 3032145..3033635(+) (comM) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGTCTTTTGCCAAAATCTATACTCGGGGTTTGCTCGGCTTAAATGCACCCCAAATTGAAGTTGAAGTTCATGTCAGCCA
AGGCCTGCCTTCATTGACCATTGTGGGCCTACCTGAGGCCGCCGTCCGTGAAAGTAAAGACCGTGTCCGCTCTGCGATTA
TTAATAGCGGCTTTCAGTTTCCGACCAAACGTCTGACCATCAATCTTGCACCCGCAGATTTACCCAAAGATGGTTCACGT
TTAGATCTCGCCATTGCTTTAGGGATTCTGATCGCGTCGGGACAACTTCCTGAAAATGCAGCAGATGGTTTTGAATTTAT
TGGAGAATTGGCACTTGATGGTTATTTACGACCTGTCAGTGGCATCTTAAGTATAGCCATTGCCTGTCAGCATATCGGGC
ATCATCTGATTCTACCGGCACTCAATGCCGATGAAGCGGCGCAACTGCCGGAGTTCCAAGTCTTTCCTGCTCAGCATCTT
AAGGATGTATGTGAACATTTGAGTCGTTCAGCCTTAATCAGCAGCCACCCTTCAACATCGTCAGCTAATCAACACAGTTA
CCCTTTTGATTTATCTGATGTGAAAGGTCAACTGAGACCACGTCGTGCTTTAGAAATTGCGGCGGCTGGCGGTCATTCCC
TGCTATTTCGTGGCCCTCCAGGCACAGGTAAAACTCTACTCGCCTCGCGTTTAGCCAGCATTCTTCCGCCCTTAGATATG
CAAGAAAATTTGCAAGTCGCGAGTATTTATTCCATTGCAGGTGCAAATCATCATTTTGGGCAACGTCCATTTCGTGCGCC
ACACCATACGGCATCTGCGATTGCCCTCGTCGGTGGAGGATCAAATCCTAAACCGGGTGAAATCACCTTGGCACATTTAG
GGGTTTTATTTTTAGATGAGCTGCCTGAATTTGATCGAAAGGTGTTGGAGGTATTACGGCAACCACTCGAATCCAAAGAA
ATTGTGATTTCACGGGCTTCTCGTCAAATCACCTTCCCTGCGAATTTTCAATTGATCGCAGCAATGAATCCTTGCCCATG
TGGCTATGCCTTTAACCAAGACAGCCGCTGTCAATGTAGTGCTGAAAGTATTAAACGCTATCAAAACCGTATTTCAGGTC
CATTATTAGATCGTATTGATTTACATATAGATGTCCCGCCACTGGCAGCGCATGAATTACAAAGTTCGCAAGAGGTTGAA
AGTTCAAGTACAGTTAGGCATCGTGTCATTCAAGCTTATGAGTTACAAATAGAGCGTCAGCAAAAATCCAATATGGCGCT
CACGCCGACGCAATTGGAGCAACAAGCGGTTTTGGATGCTACTGCGCAGAATATTTTACAGTTAGCACAGCAACGAATGA
ATTTATCTGCGCGTGCCTATCATCGGGTGTTACGTGTTGCCAGAACCATTGCCGACTTAGCTCAAAGTGAACACATTCAA
GCTCAGCACGTTTCTGAAGCACTGTCCTATCGAAGCCAGCTCAATACTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Haemophilus influenzae Rd KW20

49.402

100

0.5
  comM Glaesserella parasuis strain SC1401

49.4

100

0.498
  comM Legionella pneumophila str. Paris

49.4

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.498
  comM Vibrio campbellii strain DS40M4

48.992

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.726

100

0.464

Multiple sequence alignment