Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G0029_RS00900 Genome accession   NZ_CP048670
Coordinates   195862..196449 (+) Length   195 a.a.
NCBI ID   WP_078193176.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190862..201449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS00875 (G0029_00870) - 190974..191312 (+) 339 WP_180108161.1 GlpM family protein -
  G0029_RS00880 (G0029_00875) - 191502..192224 (+) 723 WP_180109635.1 hypothetical protein -
  G0029_RS00885 (G0029_00880) tenA 192332..192997 (-) 666 WP_180109636.1 thiaminase II -
  G0029_RS00890 (G0029_00885) - 193205..194290 (+) 1086 WP_180035454.1 DUF475 domain-containing protein -
  G0029_RS00895 (G0029_00890) - 194446..195810 (+) 1365 WP_111884498.1 MFS transporter -
  G0029_RS00900 (G0029_00895) ssb 195862..196449 (+) 588 WP_078193176.1 single-stranded DNA-binding protein Machinery gene
  G0029_RS00905 (G0029_00900) ahpC 196733..197296 (+) 564 WP_078190520.1 alkyl hydroperoxide reductase subunit C -
  G0029_RS00910 (G0029_00905) - 197364..198287 (-) 924 WP_180088779.1 LysR substrate-binding domain-containing protein -
  G0029_RS00915 (G0029_00910) ycaC 198395..199021 (-) 627 WP_078193174.1 isochorismate family cysteine hydrolase YcaC -
  G0029_RS00920 (G0029_00915) - 199350..200228 (+) 879 WP_078190517.1 pirin family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21479.18 Da        Isoelectric Point: 6.4819

>NTDB_id=422182 G0029_RS00900 WP_078193176.1 195862..196449(+) (ssb) [Acinetobacter sp. YH12138 strain YH12138_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQGGQERYTTEIRGEQMQMLDNNRQQGEQGQGGDFGQPRFNNQQGGYNNNQNQGGYGNSSNQGGYGNNQPAQ
GNSYGNNNPGGFAPKQQPAPTPAPAAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=422182 G0029_RS00900 WP_078193176.1 195862..196449(+) (ssb) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTGGGTCGTGACCCTGAAACAAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAGTTTTCAATTGCAACGAGTGATTCATGGACAGATAAAAATACAGGTGAACGTAAAGAGCAAACAGAATGGC
ACCGTATTGTGTTACATAACCGCTTAGGTGAAATTGCACAGCAATATTTGCGCAAAGGTTCTAAAGTGTATATTGAAGGT
TCATTACGTACTCGTCAGTGGACAGATCAAGGCGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAACAAATGCAAAT
GCTTGACAATAATCGCCAACAAGGCGAACAAGGTCAAGGCGGTGATTTTGGTCAGCCTCGTTTTAATAATCAACAAGGTG
GTTATAACAATAACCAAAACCAAGGTGGCTACGGTAATAGCTCAAACCAAGGCGGTTATGGCAATAACCAACCGGCTCAA
GGCAATAGCTATGGCAATAACAACCCAGGTGGTTTTGCGCCAAAACAACAGCCTGCACCGACACCGGCTCCTGCAGCAGC
AGATTTAGATGACGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.308

100

0.523
  ssb Vibrio cholerae strain A1552

45.96

100

0.467
  ssb Neisseria gonorrhoeae MS11

40.415

98.974

0.4
  ssb Neisseria meningitidis MC58

40.415

98.974

0.4

Multiple sequence alignment