Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   G0027_RS06995 Genome accession   NZ_CP048654
Coordinates   1461380..1462870 (+) Length   496 a.a.
NCBI ID   WP_152342157.1    Uniprot ID   A0A7S6VPQ0
Organism   Acinetobacter indicus strain C15_T     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1456380..1467870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0027_RS06970 (G0027_06975) ribD 1457292..1458380 (-) 1089 WP_152342159.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  G0027_RS06975 (G0027_06980) nrdR 1458404..1458862 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  G0027_RS06980 (G0027_06985) - 1459002..1460405 (-) 1404 WP_152342158.1 ammonium transporter -
  G0027_RS06985 (G0027_06990) glnK 1460468..1460806 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  G0027_RS06990 (G0027_06995) - 1461083..1461310 (+) 228 WP_005181545.1 accessory factor UbiK family protein -
  G0027_RS06995 (G0027_07000) comM 1461380..1462870 (+) 1491 WP_152342157.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G0027_RS07000 (G0027_07005) - 1462944..1463705 (-) 762 WP_127801551.1 TorF family putative porin -
  G0027_RS07005 (G0027_07010) - 1464463..1465791 (+) 1329 WP_005181539.1 OprD family outer membrane porin -
  G0027_RS07010 (G0027_07015) ppa 1465894..1466418 (-) 525 WP_005181532.1 inorganic diphosphatase -
  G0027_RS07015 (G0027_07020) - 1466536..1466937 (-) 402 WP_005181530.1 MAPEG family protein -
  G0027_RS07020 (G0027_07025) - 1467041..1467427 (+) 387 WP_075167837.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54101.17 Da        Isoelectric Point: 7.3353

>NTDB_id=422123 G0027_RS06995 WP_152342157.1 1461380..1462870(+) (comM) [Acinetobacter indicus strain C15_T]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALTPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRAQPSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=422123 G0027_RS06995 WP_152342157.1 1461380..1462870(+) (comM) [Acinetobacter indicus strain C15_T]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCCGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCGCTGCAGCCTTTTGCAGCAAGCTCGGAAACCCGTTTGGAACGCTA
TGCTTTTGATCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGCGCCCTAGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATACCCCACATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCACTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCCTGGCTCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAAGAA
ATTGTGATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AACCCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTCTTAAGGGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAAATTCAG
ACCGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGCCCAGCCCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6VPQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.497

100

0.52
  comM Glaesserella parasuis strain SC1401

51.2

100

0.516
  comM Vibrio cholerae strain A1552

51.008

100

0.51
  comM Vibrio campbellii strain DS40M4

51.008

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.605

100

0.506
  comM Legionella pneumophila str. Paris

50.605

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.468

Multiple sequence alignment