Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GXM18_RS04420 Genome accession   NZ_CP048626
Coordinates   922145..922636 (-) Length   163 a.a.
NCBI ID   WP_026255339.1    Uniprot ID   -
Organism   Blautia producta ATCC 27340 = DSM 2950 strain JCM 1471     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 917145..927636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXM18_RS04390 (GXM18_04390) - 917233..918786 (-) 1554 WP_018594081.1 sensor domain-containing diguanylate cyclase -
  GXM18_RS30160 (GXM18_04395) - 919053..919231 (-) 179 Protein_885 H(+)-transporting ATPase -
  GXM18_RS04400 (GXM18_04400) - 919371..920195 (-) 825 WP_018594083.1 glycosyltransferase family 8 protein -
  GXM18_RS04405 (GXM18_04405) - 920242..921357 (-) 1116 WP_018594084.1 radical SAM/SPASM domain-containing protein -
  GXM18_RS29250 - 921400..922083 (-) 684 Protein_888 putative ABC transporter permease -
  GXM18_RS04420 (GXM18_04420) rcrQ 922145..922636 (-) 492 WP_026255339.1 ATP-binding cassette domain-containing protein Regulator
  GXM18_RS29255 - 922608..922913 (-) 306 WP_233456951.1 hypothetical protein -
  GXM18_RS04425 (GXM18_04425) - 922898..923839 (-) 942 WP_390604031.1 ATP-binding cassette domain-containing protein -
  GXM18_RS04430 (GXM18_04430) - 923837..924516 (-) 680 Protein_892 ABC transporter transmembrane domain-containing protein -
  GXM18_RS04435 (GXM18_04435) - 924655..925467 (+) 813 WP_018594087.1 MerR family transcriptional regulator -
  GXM18_RS04440 (GXM18_04440) - 925642..926748 (+) 1107 WP_207638199.1 AI-2E family transporter -
  GXM18_RS04445 (GXM18_04445) - 926977..927411 (+) 435 WP_018594090.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18009.53 Da        Isoelectric Point: 4.9725

>NTDB_id=421928 GXM18_RS04420 WP_026255339.1 922145..922636(-) (rcrQ) [Blautia producta ATCC 27340 = DSM 2950 strain JCM 1471]
MVLQGTWLFEGTVAENLSYGKMDAKREDIVAAAKAACCDHFIRTLPNGYDTVISGDNATLSHGQMQLLTIARAMLMNPAI
LVLDEATSSVDTRTEVEIQKAMTRLMQDKTSFVIAHRLSTIRNADLILVVRDGDIVERGKHDDILARNGFYASLYNSQFE
EAG

Nucleotide


Download         Length: 492 bp        

>NTDB_id=421928 GXM18_RS04420 WP_026255339.1 922145..922636(-) (rcrQ) [Blautia producta ATCC 27340 = DSM 2950 strain JCM 1471]
ATGGTGCTTCAGGGCACCTGGCTGTTTGAAGGGACGGTAGCGGAAAATCTATCCTACGGCAAGATGGATGCAAAGCGGGA
GGATATTGTAGCTGCCGCTAAGGCTGCCTGCTGTGACCATTTCATCCGTACCCTGCCCAATGGCTATGATACTGTGATCT
CCGGTGACAACGCCACTCTCTCCCATGGACAGATGCAGCTCCTTACCATCGCCCGTGCCATGCTGATGAATCCTGCCATC
CTGGTACTGGACGAGGCAACCTCCAGTGTGGATACCCGCACAGAGGTGGAAATTCAGAAGGCCATGACCCGCCTTATGCA
GGACAAAACCAGCTTTGTCATTGCCCACCGCCTCTCCACCATCCGAAATGCTGACCTAATTCTGGTGGTGCGGGACGGTG
ATATCGTGGAACGGGGAAAACACGATGACATTCTGGCAAGAAACGGCTTTTATGCTTCCCTCTATAACAGCCAGTTCGAG
GAGGCAGGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

67.702

98.773

0.669
  comA Streptococcus mitis SK321

43.871

95.092

0.417
  comA Streptococcus pneumoniae Rx1

43.226

95.092

0.411
  comA Streptococcus pneumoniae R6

43.226

95.092

0.411
  comA Streptococcus pneumoniae D39

43.226

95.092

0.411
  comA Streptococcus pneumoniae TIGR4

43.226

95.092

0.411
  comA Streptococcus mitis NCTC 12261

41.935

95.092

0.399
  comA/nlmT Streptococcus mutans UA159

41.026

95.706

0.393
  comA Streptococcus gordonii str. Challis substr. CH1

40.645

95.092

0.387

Multiple sequence alignment