Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   G3T12_RS03960 Genome accession   NZ_CP048623
Coordinates   829027..830268 (+) Length   413 a.a.
NCBI ID   WP_047678678.1    Uniprot ID   A0AAP8LX99
Organism   Lacticaseibacillus rhamnosus strain WHH1155     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 824027..835268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T12_RS03940 (G3T12_03995) yfmH 825165..826457 (+) 1293 WP_047678681.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  G3T12_RS03945 (G3T12_04000) ymfI 826457..827185 (+) 729 WP_005713294.1 elongation factor P 5-aminopentanone reductase -
  G3T12_RS03950 (G3T12_04005) - 827272..828207 (+) 936 WP_005688668.1 helix-turn-helix domain-containing protein -
  G3T12_RS03955 (G3T12_04010) pgsA 828204..828797 (+) 594 WP_394535226.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  G3T12_RS03960 (G3T12_04015) cinA 829027..830268 (+) 1242 WP_047678678.1 competence/damage-inducible protein A Machinery gene
  G3T12_RS03965 (G3T12_04020) recA 830320..831372 (+) 1053 WP_047678675.1 recombinase RecA Machinery gene
  G3T12_RS03970 (G3T12_04030) rny 832102..833673 (+) 1572 WP_005684479.1 ribonuclease Y -
  G3T12_RS03975 (G3T12_04035) - 833762..834418 (-) 657 WP_095593725.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44528.18 Da        Isoelectric Point: 6.9894

>NTDB_id=421902 G3T12_RS03960 WP_047678678.1 829027..830268(+) (cinA) [Lacticaseibacillus rhamnosus strain WHH1155]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQDAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGARNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=421902 G3T12_RS03960 WP_047678678.1 829027..830268(+) (cinA) [Lacticaseibacillus rhamnosus strain WHH1155]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGAATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCGACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCCAAGACGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAGGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACGGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACCTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCTGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CTGGGGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCT
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGTGAGAAACCAATAGCACAGGTTTATCATTTTCCGGGTGCGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.306

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.831

100

0.518
  cinA Streptococcus pneumoniae R6

50.831

100

0.518
  cinA Streptococcus pneumoniae D39

50.594

100

0.516
  cinA Streptococcus mutans UA159

50.966

100

0.511
  cinA Bacillus subtilis subsp. subtilis str. 168

44.417

99.758

0.443
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38

Multiple sequence alignment