Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACIFE_RS11630 Genome accession   NC_015942
Coordinates   2429885..2431396 (+) Length   503 a.a.
NCBI ID   WP_014029774.1    Uniprot ID   G0JPI3
Organism   Acidithiobacillus ferrivorans SS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2424885..2436396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFE_RS11600 (Acife_2424) - 2425000..2425392 (-) 393 WP_014029768.1 SCP2 sterol-binding domain-containing protein -
  ACIFE_RS11605 (Acife_2425) - 2425510..2426259 (-) 750 WP_014029769.1 tRNA threonylcarbamoyladenosine dehydratase -
  ACIFE_RS11610 (Acife_2426) - 2426256..2427026 (-) 771 WP_014029770.1 TatD family hydrolase -
  ACIFE_RS11615 (Acife_2427) - 2427200..2428429 (+) 1230 WP_014029771.1 FAD-dependent monooxygenase -
  ACIFE_RS11620 (Acife_2428) - 2428419..2429606 (+) 1188 WP_014029772.1 FAD-dependent monooxygenase -
  ACIFE_RS11625 (Acife_2429) - 2429618..2429881 (+) 264 WP_014029773.1 accessory factor UbiK family protein -
  ACIFE_RS11630 (Acife_2430) comM 2429885..2431396 (+) 1512 WP_014029774.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACIFE_RS11635 (Acife_2431) - 2431522..2432979 (-) 1458 WP_014029775.1 catalase -
  ACIFE_RS11640 (Acife_2432) - 2433149..2433592 (-) 444 WP_014029776.1 SEL1-like repeat protein -
  ACIFE_RS11645 (Acife_2433) - 2433617..2435236 (-) 1620 WP_014029777.1 peptide chain release factor 3 -
  ACIFE_RS11650 (Acife_2434) rimI 2435243..2435713 (-) 471 WP_014029778.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACIFE_RS11655 (Acife_2435) tsaB 2435710..2436384 (-) 675 WP_014029779.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54005.86 Da        Isoelectric Point: 8.2182

>NTDB_id=42130 ACIFE_RS11630 WP_014029774.1 2429885..2431396(+) (comM) [Acidithiobacillus ferrivorans SS3]
MPLAIVHSRALTGVQAAGVTVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGFEFPARRMVVNLAPADLPKEGGR
FDLPMAIGILAASGQLPAAALAKLEMIGELALDGSLRPVTGTLSSTLAAGQANRAILVPQGNAQEAAFAQSTPVFACANL
AEAVAHLRGTDRLPEVIADAEAQESAIPYPDLHDVRGQESAKRALIVAAVGGHHLLLSGPPGTGKSMLAARLPGLLPPLR
RSEALEVAAIHSLQESGFDIRHWGRRPFRSPHHSASSAALVGGGSHPRPGEISMAHHGILFLDEMPEFPRAVLEVLREPL
ESGEIHIARAARRAIFPARFQLVAAMNPCPCGHFGNPQQMCRCTPAQISQYRSRLSGPLLDRIDIQLEVPTLPVSALQEA
AQGESSTYWRERIAQAVDRQWQRQQARNAQLQGERLAQFCALDAVGTRLLSRATETLHLSARAYHRVLRVARSIADLEGS
DPISTQHLAEAIQYRRLAQTLMR

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=42130 ACIFE_RS11630 WP_014029774.1 2429885..2431396(+) (comM) [Acidithiobacillus ferrivorans SS3]
TTGCCGCTGGCGATAGTCCATAGCCGCGCCCTTACCGGGGTGCAGGCGGCGGGCGTCACTGTGGAATGCGATCTGGGCCC
CGGCCTGCCCACCTTCGCCGTCGTCGGCCTCGCCGAAACGGCGGTCAAGGAAGCCCGGGACCGGGTACGCTCGGCTATTC
AGAACAGTGGTTTTGAGTTCCCGGCGCGGCGTATGGTCGTCAATCTGGCCCCCGCCGACCTGCCTAAAGAAGGTGGCCGC
TTCGATCTGCCCATGGCCATCGGCATTCTTGCCGCCAGCGGGCAGCTGCCTGCAGCCGCACTGGCAAAATTGGAGATGAT
TGGCGAACTGGCGCTGGATGGTAGCCTGCGTCCGGTGACGGGCACGCTCTCCAGCACACTGGCAGCGGGACAAGCCAATC
GTGCCATTCTGGTGCCGCAAGGCAATGCCCAGGAAGCCGCTTTTGCCCAAAGCACCCCGGTCTTTGCCTGCGCGAATCTG
GCAGAGGCTGTCGCCCACTTGCGCGGCACGGATCGCCTGCCCGAAGTCATCGCCGATGCGGAGGCTCAGGAATCCGCCAT
TCCCTACCCCGATCTGCATGACGTACGCGGTCAGGAATCGGCCAAGCGGGCGCTGATTGTCGCAGCGGTAGGCGGTCATC
ACCTGCTCCTGTCGGGCCCACCGGGCACCGGCAAAAGCATGCTGGCGGCGCGACTGCCCGGCCTGCTGCCCCCCCTGCGC
CGCAGCGAAGCGCTGGAAGTGGCCGCCATCCACAGCCTGCAAGAAAGCGGCTTCGATATTCGTCATTGGGGTAGACGCCC
GTTCCGTAGTCCCCACCATAGTGCTTCTTCTGCGGCACTGGTGGGCGGGGGTTCGCACCCGCGTCCCGGCGAAATCAGCA
TGGCGCACCACGGTATTCTTTTTCTGGACGAAATGCCCGAGTTCCCCCGTGCGGTTTTGGAAGTACTGCGGGAGCCGTTG
GAGTCTGGAGAAATCCATATCGCCAGGGCGGCGCGGCGGGCTATTTTTCCGGCCCGTTTTCAGTTGGTCGCAGCGATGAA
TCCCTGTCCCTGCGGCCATTTCGGTAATCCGCAGCAGATGTGCCGCTGTACCCCGGCGCAGATCAGCCAATACCGCAGCC
GGCTCTCCGGCCCACTGCTGGACCGCATCGACATCCAGCTGGAGGTGCCCACCCTGCCGGTCAGCGCCTTACAAGAGGCA
GCACAAGGTGAAAGTTCCACCTACTGGCGCGAACGTATAGCTCAGGCCGTTGATCGCCAGTGGCAGCGCCAGCAGGCGCG
CAACGCGCAACTTCAAGGCGAACGGCTGGCGCAGTTTTGCGCCCTGGATGCGGTGGGCACCCGCCTGCTCAGCCGCGCCA
CCGAGACCCTGCACCTCTCCGCACGCGCTTACCATCGGGTGCTGCGCGTCGCCCGCAGCATCGCGGATCTGGAAGGGAGT
GATCCGATCAGTACCCAGCATCTGGCAGAAGCCATCCAGTATCGACGCTTGGCACAGACACTGATGCGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G0JPI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.59

99.801

0.525
  comM Glaesserella parasuis strain SC1401

51.67

100

0.523
  comM Vibrio campbellii strain DS40M4

52.191

99.801

0.521
  comM Haemophilus influenzae Rd KW20

50.493

100

0.509
  comM Legionella pneumophila str. Paris

48.622

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.622

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.227

100

0.449

Multiple sequence alignment