Detailed information NTG0421170

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GYM54_RS18130
• Genome accession: NZ_CP048411
• Coordinates: 3940875..3941738 (+)
• Length: 287 a.a.
• NCBI ID: WP_181100129.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MTM4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3935875..3946738

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GYM54_RS18105 (GYM54_18100)	-	3935922..3936722 (-)	801	WP_181100118.1	hypothetical protein	-
GYM54_RS18110 (GYM54_18105)	-	3936781..3937233 (-)	453	WP_181100120.1	hypothetical protein	-
GYM54_RS21890 (GYM54_18110)	pilA	3937253..3937429 (-)	177	WP_181100122.1	type IV pilin protein	Machinery gene
GYM54_RS18120 (GYM54_18115)	pilB	3937941..3939644 (+)	1704	WP_181100124.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GYM54_RS18125 (GYM54_18120)	pilC	3939647..3940870 (+)	1224	WP_181100126.1	type II secretion system F family protein	Machinery gene
GYM54_RS18130 (GYM54_18125)	pilD	3940875..3941738 (+)	864	WP_181100129.1	A24 family peptidase	Machinery gene
GYM54_RS18135 (GYM54_18130)	coaE	3942053..3942661 (+)	609	WP_181100131.1	dephospho-CoA kinase	-
GYM54_RS18140 (GYM54_18135)	yacG	3942658..3942852 (+)	195	WP_181100133.1	DNA gyrase inhibitor YacG	-
GYM54_RS18145 (GYM54_18140)	-	3942862..3943554 (-)	693	WP_131649934.1	energy-coupling factor ABC transporter permease	-
GYM54_RS18150 (GYM54_18145)	-	3943633..3944670 (-)	1038	WP_131649935.1	NADP(H)-dependent aldo-keto reductase	-
GYM54_RS18155 (GYM54_18150)	rplM	3945065..3945493 (+)	429	WP_019342644.1	50S ribosomal protein L13	-
GYM54_RS18160 (GYM54_18155)	rpsI	3945508..3945900 (+)	393	WP_131649936.1	30S ribosomal protein S9	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31685.76 Da
• Isoelectric Point: 7.3647

>NTDB_id=421170 GYM54_RS18130 WP_181100129.1 3940875..3941738(+) (pilD) [Pseudomonas sp. MTM4]
MILQLLASNLLAFVFCVFVLGLLVGSFLNVVIHRLPIMMQRDWRAQAREFLELPGEPATTFNLILPHSHCPHCDHEIRPW
ENIPLVSWLALRGKCSSCKAPISKRYPLVELACGLLSGYVAWHFGFTWQAGAMLLLTWGLLAMSMIDVDHKLLPDSLVLP
LLWLGLLVNLFGLFATLPDAVWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGAV
LGTIMLRVQKADSGTAIPFGPYLAIAGWVALLWGDQITSSYLQFAGF

Nucleotide

• Length: 864 bp

>NTDB_id=421170 GYM54_RS18130 WP_181100129.1 3940875..3941738(+) (pilD) [Pseudomonas sp. MTM4]
ATGATTCTTCAGTTGCTGGCCAGCAACCTGCTGGCCTTTGTTTTCTGCGTGTTTGTGCTTGGTCTGCTGGTCGGCAGTTT
TCTCAACGTCGTGATACACCGCCTGCCCATCATGATGCAGCGCGATTGGCGCGCTCAGGCTCGTGAGTTTCTCGAGCTGC
CTGGCGAGCCTGCCACGACGTTCAATCTGATCCTCCCTCACTCCCACTGCCCGCACTGCGATCACGAAATTCGGCCGTGG
GAGAACATCCCGTTGGTGAGTTGGCTGGCGCTGCGGGGCAAGTGTTCGTCATGCAAGGCGCCGATCAGCAAACGCTACCC
TTTAGTTGAGCTGGCGTGCGGATTGCTCTCGGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCCGGTGCGATGT
TGCTGCTGACCTGGGGGCTGCTGGCGATGAGCATGATCGATGTCGATCATAAGCTGCTGCCGGACTCCCTCGTGTTGCCG
CTGCTTTGGCTGGGATTGCTCGTCAATCTGTTCGGCCTGTTCGCTACGCTGCCGGATGCGGTATGGGGTGCGGTTGCCGG
CTATCTCAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTATGGCGACTTTAAGC
TGCTGGCGATGCTTGGTGCCTGGGGTGGGTGGCAGGTCTTGCCGTTGACCATTCTGTTGTCGTCGGTCGTTGGGGCGGTG
CTGGGTACGATCATGCTGCGTGTGCAGAAGGCCGATAGCGGCACGGCCATTCCTTTTGGGCCCTATCTGGCGATCGCTGG
CTGGGTCGCCCTGCTTTGGGGTGATCAAATCACGTCGAGTTATCTGCAGTTCGCGGGGTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.3	93.031	0.561
pilD	Vibrio campbellii strain DS40M4	56.41	95.122	0.537
pilD	Acinetobacter nosocomialis M2	50.704	98.955	0.502
pilD	Acinetobacter baumannii D1279779	50.352	98.955	0.498
pilD	Neisseria gonorrhoeae MS11	52.874	90.941	0.481