Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GZH81_RS22405 Genome accession   NZ_CP048388
Coordinates   4771405..4772925 (+) Length   506 a.a.
NCBI ID   WP_020996103.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain PNUCL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4766405..4777925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH81_RS22385 - 4767961..4768890 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  GZH81_RS22390 ilvM 4768908..4769171 (-) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  GZH81_RS22395 ilvG 4769168..4770814 (-) 1647 WP_048215232.1 acetolactate synthase 2 catalytic subunit -
  GZH81_RS22400 ilvL 4770954..4771052 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GZH81_RS22405 comM 4771405..4772925 (+) 1521 WP_020996103.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GZH81_RS22410 maoP 4772950..4773288 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  GZH81_RS22415 hdfR 4773395..4774240 (+) 846 WP_212024597.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55064.97 Da        Isoelectric Point: 7.2664

>NTDB_id=420924 GZH81_RS22405 WP_020996103.1 4771405..4772925(+) (comM) [Citrobacter portucalensis strain PNUCL1]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVIAARERQYRRQNKLNAQLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=420924 GZH81_RS22405 WP_020996103.1 4771405..4772925(+) (comM) [Citrobacter portucalensis strain PNUCL1]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGTAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCTCGCGATCGAGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCGTCTGAGCAGCTTACAACCCATAACCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGTTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATTCTAAGTTTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACTGCCATGGTCGGTGGCGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACACTACGCTACCTCAATCGATTATCAGGCC
CATTTCTTGACCGCTTCGATCTCTCCCTTGAAATTCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATAGCAGCACGAGAGCGTCAGTATCGGCGGCAGAATAAGTTAAATGCGCA
ACTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCTTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATA
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427

Multiple sequence alignment