Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GYM74_RS04485 Genome accession   NZ_CP048265
Coordinates   1007105..1007623 (-) Length   172 a.a.
NCBI ID   WP_220219292.1    Uniprot ID   -
Organism   Gilliamella sp. ESL0405     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1002105..1012623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM74_RS04460 (GYM74_04445) lpxK 1003629..1004636 (+) 1008 WP_220219288.1 tetraacyldisaccharide 4'-kinase -
  GYM74_RS04465 (GYM74_04450) - 1004640..1004825 (+) 186 WP_220219289.1 Trm112 family protein -
  GYM74_RS04470 (GYM74_04455) kdsB 1004847..1005611 (+) 765 WP_220219290.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GYM74_RS04475 (GYM74_04460) - 1005615..1006307 (+) 693 WP_220219291.1 DUF2461 domain-containing protein -
  GYM74_RS04480 (GYM74_04465) - 1006325..1006987 (-) 663 WP_220219624.1 MarC family NAAT transporter -
  GYM74_RS04485 (GYM74_04470) ssb 1007105..1007623 (-) 519 WP_220219292.1 single-stranded DNA-binding protein Machinery gene
  GYM74_RS04490 (GYM74_04475) corA 1007840..1008781 (+) 942 WP_220219293.1 magnesium/cobalt transporter CorA -
  GYM74_RS04495 (GYM74_04480) glk 1008979..1009938 (+) 960 WP_220219294.1 glucokinase -
  GYM74_RS04500 (GYM74_04485) - 1009963..1010211 (+) 249 WP_220219295.1 YcgL domain-containing protein -
  GYM74_RS04505 (GYM74_04490) - 1010208..1010630 (+) 423 WP_220219296.1 YcgN family cysteine cluster protein -
  GYM74_RS04510 (GYM74_04495) - 1010663..1011220 (-) 558 WP_220219297.1 YggT family protein -
  GYM74_RS04515 (GYM74_04500) - 1011257..1011958 (-) 702 WP_220219298.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.54 Da        Isoelectric Point: 4.7591

>NTDB_id=420309 GYM74_RS04485 WP_220219292.1 1007105..1007623(-) (ssb) [Gilliamella sp. ESL0405]
MANRGINKVILVGNLGQDPEVRYMPNGNAVANFSVATSESWKDRQTGETRDRTEWHRVVVFGKLAEIAGEYIKKGTQVYL
EGQLQTRKWQDQSGADRYTTEVVINPIGGTLQILGSRNSGDNSFNDGSQSWGQSANNTSSAPAAPRQAAPTAPAAQPATP
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=420309 GYM74_RS04485 WP_220219292.1 1007105..1007623(-) (ssb) [Gilliamella sp. ESL0405]
ATGGCAAACCGAGGAATAAATAAAGTCATTTTAGTCGGTAACTTAGGTCAAGATCCAGAAGTTCGTTACATGCCAAATGG
TAATGCTGTCGCTAATTTTAGTGTTGCAACTTCAGAATCATGGAAAGATAGACAAACAGGTGAAACCCGAGACCGAACAG
AATGGCATCGCGTTGTCGTGTTTGGAAAATTAGCTGAAATTGCTGGCGAATATATCAAAAAAGGCACACAAGTTTATCTT
GAAGGTCAATTACAAACTCGTAAATGGCAAGACCAATCAGGCGCCGATCGTTATACGACTGAAGTTGTAATAAACCCAAT
TGGCGGTACATTACAAATTTTAGGTTCACGTAACAGTGGCGATAATAGCTTTAATGACGGTTCACAAAGTTGGGGACAAA
GTGCTAATAACACTTCATCTGCGCCGGCAGCACCTCGCCAAGCGGCACCAACAGCGCCAGCAGCACAACCGGCTACACCT
GAGCCACCAATGGATTTTGATGACGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.101

100

0.605
  ssb Glaesserella parasuis strain SC1401

52.432

100

0.564
  ssb Neisseria gonorrhoeae MS11

50

100

0.523
  ssb Neisseria meningitidis MC58

50

100

0.517
  ssb Latilactobacillus sakei subsp. sakei 23K

34.831

100

0.36

Multiple sequence alignment