Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   GYN06_RS02345 Genome accession   NZ_CP048246
Coordinates   452932..453405 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT602     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 447932..458405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN06_RS02320 (GYN06_02320) dnaB 448356..449762 (+) 1407 WP_123768188.1 replicative DNA helicase -
  GYN06_RS02325 (GYN06_02325) pilH 450070..450735 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN06_RS02330 (GYN06_02330) pilV 450767..451378 (+) 612 WP_123768187.1 type IV pilus modification protein PilV Machinery gene
  GYN06_RS02335 (GYN06_02335) pilJ 451375..452340 (+) 966 WP_250333194.1 PilW family protein Machinery gene
  GYN06_RS02340 (GYN06_02340) pilK 452319..452930 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  GYN06_RS02345 (GYN06_02345) pilL 452932..453405 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  GYN06_RS02350 (GYN06_02350) - 453475..453783 (-) 309 WP_025456241.1 AzlD family protein -
  GYN06_RS02355 (GYN06_02355) - 453780..454489 (-) 710 Protein_461 AzlC family ABC transporter permease -
  GYN06_RS02360 (GYN06_02360) dut 454655..455107 (+) 453 WP_003687923.1 dUTP diphosphatase -
  GYN06_RS02365 (GYN06_02365) dapC 455185..456372 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  GYN06_RS02370 (GYN06_02370) yaaA 456528..457307 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=420136 GYN06_RS02345 WP_012503482.1 452932..453405(+) (pilL) [Neisseria gonorrhoeae strain CT602]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=420136 GYN06_RS02345 WP_012503482.1 452932..453405(+) (pilL) [Neisseria gonorrhoeae strain CT602]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854

Multiple sequence alignment