Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   GYN06_RS02330 Genome accession   NZ_CP048246
Coordinates   450767..451378 (+) Length   203 a.a.
NCBI ID   WP_123768187.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT602     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 445767..456378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN06_RS02305 (GYN06_02305) - 446213..446545 (+) 333 WP_003687908.1 hypothetical protein -
  GYN06_RS02310 (GYN06_02310) - 446872..447381 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GYN06_RS02315 (GYN06_02315) - 447611..448192 (-) 582 WP_033910016.1 superoxide dismutase -
  GYN06_RS02320 (GYN06_02320) dnaB 448356..449762 (+) 1407 WP_123768188.1 replicative DNA helicase -
  GYN06_RS02325 (GYN06_02325) pilH 450070..450735 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN06_RS02330 (GYN06_02330) pilV 450767..451378 (+) 612 WP_123768187.1 type IV pilus modification protein PilV Machinery gene
  GYN06_RS02335 (GYN06_02335) pilJ 451375..452340 (+) 966 WP_250333194.1 PilW family protein Machinery gene
  GYN06_RS02340 (GYN06_02340) pilK 452319..452930 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  GYN06_RS02345 (GYN06_02345) pilL 452932..453405 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  GYN06_RS02350 (GYN06_02350) - 453475..453783 (-) 309 WP_025456241.1 AzlD family protein -
  GYN06_RS02355 (GYN06_02355) - 453780..454489 (-) 710 Protein_461 AzlC family ABC transporter permease -
  GYN06_RS02360 (GYN06_02360) dut 454655..455107 (+) 453 WP_003687923.1 dUTP diphosphatase -
  GYN06_RS02365 (GYN06_02365) dapC 455185..456372 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22140.20 Da        Isoelectric Point: 5.0254

>NTDB_id=420133 GYN06_RS02330 WP_123768187.1 450767..451378(+) (pilV) [Neisseria gonorrhoeae strain CT602]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNSILSAVDGDFKVDAVKSKVQLADEQLKRFSYELKNALPDAVGIHYAVCKDSSGKEPTLSDSGVFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=420133 GYN06_RS02330 WP_123768187.1 450767..451378(+) (pilV) [Neisseria gonorrhoeae strain CT602]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACTCTATACTATCAGCTGTGGATGGCGATTTTAAGGTTGATGCCGTGAAAAGTAAGGTGCA
GTTGGCGGATGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTCGGTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAAGAGCCGACATTGTCCGACAGCGGTGTTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAG
CGGCGGCAATATCGTATATACTTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

88.889

100

0.906
  pilI Neisseria gonorrhoeae MS11

83.744

100

0.837
  pilV Neisseria gonorrhoeae MS11

83.744

100

0.837

Multiple sequence alignment