Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GYN06_RS02325 Genome accession   NZ_CP048246
Coordinates   450070..450735 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT602     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445070..455735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYN06_RS02300 (GYN06_02300) cysT 445196..446032 (-) 837 WP_047923822.1 sulfate ABC transporter permease subunit CysT -
  GYN06_RS02305 (GYN06_02305) - 446213..446545 (+) 333 WP_003687908.1 hypothetical protein -
  GYN06_RS02310 (GYN06_02310) - 446872..447381 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GYN06_RS02315 (GYN06_02315) - 447611..448192 (-) 582 WP_033910016.1 superoxide dismutase -
  GYN06_RS02320 (GYN06_02320) dnaB 448356..449762 (+) 1407 WP_123768188.1 replicative DNA helicase -
  GYN06_RS02325 (GYN06_02325) pilH 450070..450735 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GYN06_RS02330 (GYN06_02330) pilV 450767..451378 (+) 612 WP_123768187.1 type IV pilus modification protein PilV Machinery gene
  GYN06_RS02335 (GYN06_02335) pilJ 451375..452340 (+) 966 WP_250333194.1 PilW family protein Machinery gene
  GYN06_RS02340 (GYN06_02340) pilK 452319..452930 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  GYN06_RS02345 (GYN06_02345) pilL 452932..453405 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  GYN06_RS02350 (GYN06_02350) - 453475..453783 (-) 309 WP_025456241.1 AzlD family protein -
  GYN06_RS02355 (GYN06_02355) - 453780..454489 (-) 710 Protein_461 AzlC family ABC transporter permease -
  GYN06_RS02360 (GYN06_02360) dut 454655..455107 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=420132 GYN06_RS02325 WP_047918678.1 450070..450735(+) (pilH) [Neisseria gonorrhoeae strain CT602]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=420132 GYN06_RS02325 WP_047918678.1 450070..450735(+) (pilH) [Neisseria gonorrhoeae strain CT602]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869

Multiple sequence alignment