Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | GYN06_RS02335 | Genome accession | NZ_CP048246 |
| Coordinates | 451375..452340 (+) | Length | 321 a.a. |
| NCBI ID | WP_250333194.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain CT602 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 446375..457340
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GYN06_RS02310 (GYN06_02310) | - | 446872..447381 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| GYN06_RS02315 (GYN06_02315) | - | 447611..448192 (-) | 582 | WP_033910016.1 | superoxide dismutase | - |
| GYN06_RS02320 (GYN06_02320) | dnaB | 448356..449762 (+) | 1407 | WP_123768188.1 | replicative DNA helicase | - |
| GYN06_RS02325 (GYN06_02325) | pilH | 450070..450735 (+) | 666 | WP_047918678.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| GYN06_RS02330 (GYN06_02330) | pilV | 450767..451378 (+) | 612 | WP_123768187.1 | type IV pilus modification protein PilV | Machinery gene |
| GYN06_RS02335 (GYN06_02335) | pilJ | 451375..452340 (+) | 966 | WP_250333194.1 | PilW family protein | Machinery gene |
| GYN06_RS02340 (GYN06_02340) | pilK | 452319..452930 (+) | 612 | WP_123768185.1 | pilus assembly protein | Machinery gene |
| GYN06_RS02345 (GYN06_02345) | pilL | 452932..453405 (+) | 474 | WP_012503482.1 | PilX family type IV pilin | Machinery gene |
| GYN06_RS02350 (GYN06_02350) | - | 453475..453783 (-) | 309 | WP_025456241.1 | AzlD family protein | - |
| GYN06_RS02355 (GYN06_02355) | - | 453780..454489 (-) | 710 | Protein_461 | AzlC family ABC transporter permease | - |
| GYN06_RS02360 (GYN06_02360) | dut | 454655..455107 (+) | 453 | WP_003687923.1 | dUTP diphosphatase | - |
| GYN06_RS02365 (GYN06_02365) | dapC | 455185..456372 (+) | 1188 | WP_123771553.1 | succinyldiaminopimelate transaminase | - |
| GYN06_RS02370 (GYN06_02370) | yaaA | 456528..457307 (+) | 780 | WP_047917077.1 | peroxide stress protein YaaA | - |
Sequence
Protein
Download Length: 321 a.a. Molecular weight: 35353.25 Da Isoelectric Point: 9.5286
>NTDB_id=420134 GYN06_RS02335 WP_250333194.1 451375..452340(+) (pilJ) [Neisseria gonorrhoeae strain CT602]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSGVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESPNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAVISKPGKQILNLEDVKKELKIASQHKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGGSDAKIAASSDNIIYAYRINATIRGGNVCANRT
L
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSGVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESPNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAVISKPGKQILNLEDVKKELKIASQHKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGGSDAKIAASSDNIIYAYRINATIRGGNVCANRT
L
Nucleotide
Download Length: 966 bp
>NTDB_id=420134 GYN06_RS02335 WP_250333194.1 451375..452340(+) (pilJ) [Neisseria gonorrhoeae strain CT602]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGGTGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGTGCCGATACTACCGTC
GTCAGCAGCTGTGCCGTAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGC
GAGTCAGCATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCGGCGGTAGTGATGCCAAGATTG
CCGCTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACA
CTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGGTGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTCCAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGTGCCGATACTACCGTC
GTCAGCAGCTGTGCCGTAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGC
GAGTCAGCATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCGGCGGTAGTGATGCCAAGATTG
CCGCTTCTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACA
CTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
86.604 |
100 |
0.866 |