Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FYK61_RS19675 Genome accession   NZ_CP048044
Coordinates   4630122..4631642 (+) Length   506 a.a.
NCBI ID   WP_194271990.1    Uniprot ID   -
Organism   Xanthomonas citri strain UnB-Xtec2D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4625122..4636642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK61_RS19655 (FYK61_19685) - 4625966..4626622 (+) 657 WP_194271988.1 RIO1 family regulatory kinase/ATPase -
  FYK61_RS19660 (FYK61_19690) - 4626832..4628817 (-) 1986 WP_194271989.1 beta-N-acetylglucosaminidase domain-containing protein -
  FYK61_RS19665 (FYK61_19695) - 4629299..4629673 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  FYK61_RS19670 (FYK61_19700) - 4629828..4630106 (+) 279 WP_022560200.1 accessory factor UbiK family protein -
  FYK61_RS19675 (FYK61_19705) comM 4630122..4631642 (+) 1521 WP_194271990.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FYK61_RS19680 (FYK61_19710) - 4631983..4632492 (+) 510 WP_015471471.1 lipocalin family protein -
  FYK61_RS19685 (FYK61_19715) - 4632723..4632899 (-) 177 WP_017158194.1 hypothetical protein -
  FYK61_RS19690 (FYK61_19720) - 4633280..4634842 (+) 1563 WP_042806185.1 EAL domain-containing protein -
  FYK61_RS19695 (FYK61_19725) - 4634908..4636029 (-) 1122 WP_022560205.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53822.47 Da        Isoelectric Point: 8.3425

>NTDB_id=419668 FYK61_RS19675 WP_194271990.1 4630122..4631642(+) (comM) [Xanthomonas citri strain UnB-Xtec2D]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALGDYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAISSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRIMRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=419668 FYK61_RS19675 WP_194271990.1 4630122..4631642(+) (comM) [Xanthomonas citri strain UnB-Xtec2D]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCACCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGCGCTGCCCTTC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGGCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTATGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAGCCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGTTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCAGCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAGGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGACGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CCCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
CGCGCAACTGGACCAGGCCGATACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCATGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

54.599

100

0.551
  comM Glaesserella parasuis strain SC1401

53.452

100

0.536
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Legionella pneumophila str. Paris

50.905

98.221

0.5
  comM Legionella pneumophila strain ERS1305867

50.905

98.221

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.882

100

0.451

Multiple sequence alignment