Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GWK91_RS13060 Genome accession   NZ_CP048021
Coordinates   2686790..2687254 (-) Length   154 a.a.
NCBI ID   WP_044164553.1    Uniprot ID   A0A6B9YGE0
Organism   Virgibacillus sp. MSP4-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2681790..2692254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK91_RS13040 (GWK91_13035) rplI 2682812..2683258 (-) 447 WP_044164560.1 50S ribosomal protein L9 -
  GWK91_RS13045 (GWK91_13040) - 2683255..2685234 (-) 1980 WP_044164559.1 DHH family phosphoesterase -
  GWK91_RS13050 (GWK91_13045) - 2685260..2686204 (-) 945 WP_044164557.1 YybS family protein -
  GWK91_RS13055 (GWK91_13050) rpsR 2686541..2686765 (-) 225 WP_044164555.1 30S ribosomal protein S18 -
  GWK91_RS13060 (GWK91_13055) ssbA 2686790..2687254 (-) 465 WP_044164553.1 single-stranded DNA-binding protein Machinery gene
  GWK91_RS13065 (GWK91_13060) rpsF 2687267..2687557 (-) 291 WP_044164551.1 30S ribosomal protein S6 -
  GWK91_RS13070 (GWK91_13065) ychF 2687883..2688983 (-) 1101 WP_044164549.1 redox-regulated ATPase YchF -
  GWK91_RS13075 (GWK91_13070) - 2689192..2689392 (-) 201 WP_044164547.1 DUF951 domain-containing protein -
  GWK91_RS13080 (GWK91_13075) - 2689501..2690529 (-) 1029 WP_044164544.1 membrane protein -
  GWK91_RS13085 (GWK91_13080) yyaC 2690641..2691231 (+) 591 WP_044164542.1 spore protease YyaC -
  GWK91_RS13090 (GWK91_13085) - 2691334..2692041 (-) 708 WP_044164540.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17289.02 Da        Isoelectric Point: 4.6723

>NTDB_id=419512 GWK91_RS13060 WP_044164553.1 2686790..2687254(-) (ssbA) [Virgibacillus sp. MSP4-1]
MMNRVVLVGRLTKDPDLRYTPNGVAVANFTVACNRPFSNQQGNREADFINCVVWRRAAENLANYMKKGSMIGVDGRIQTR
SFDNQEGRRVFVTEVVAESVQFLESRGSSQQGDRGSSGFRADQNPPQDNNNRREEDPFADNGEPIDLSDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=419512 GWK91_RS13060 WP_044164553.1 2686790..2687254(-) (ssbA) [Virgibacillus sp. MSP4-1]
ATGATGAATCGTGTCGTTCTTGTAGGAAGATTAACCAAGGATCCTGACTTACGTTATACACCAAATGGAGTAGCAGTTGC
GAACTTTACCGTAGCCTGCAACCGTCCCTTTTCAAATCAGCAGGGAAATCGGGAAGCTGATTTCATTAATTGTGTCGTAT
GGAGACGTGCGGCAGAAAACCTTGCAAACTACATGAAAAAGGGCAGTATGATTGGTGTAGACGGTCGTATTCAAACACGC
AGCTTTGACAACCAGGAAGGCAGAAGAGTCTTTGTTACGGAAGTTGTAGCGGAAAGTGTTCAGTTCTTAGAATCAAGGGG
ATCCTCACAACAAGGTGACAGAGGTTCATCAGGTTTTCGTGCAGATCAGAATCCTCCACAAGATAATAATAATCGTCGTG
AAGAAGATCCATTTGCAGATAATGGTGAACCAATTGATTTATCCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B9YGE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.465

100

0.675
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.61
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.637

73.377

0.416
  ssbA Streptococcus mutans UA159

38.312

100

0.383
  ssb Glaesserella parasuis strain SC1401

32.961

100

0.383

Multiple sequence alignment