Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CFU_RS02475 Genome accession   NC_015856
Coordinates   574438..574932 (+) Length   164 a.a.
NCBI ID   WP_041741114.1    Uniprot ID   -
Organism   Collimonas fungivorans Ter331     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 569438..579932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFU_RS02465 (CFU_0472) uvrA 570077..572938 (-) 2862 WP_014004464.1 excinuclease ABC subunit UvrA -
  CFU_RS02470 (CFU_0473) - 573195..574391 (+) 1197 WP_085959158.1 MFS transporter -
  CFU_RS02475 (CFU_0475) ssb 574438..574932 (+) 495 WP_041741114.1 single-stranded DNA-binding protein Machinery gene
  CFU_RS25085 (CFU_0476) - 575147..575376 (+) 230 Protein_502 tyrosine-type recombinase/integrase -
  CFU_RS02480 (CFU_0477) - 575369..576406 (-) 1038 WP_041742941.1 hypothetical protein -
  CFU_RS23615 - 576846..576986 (-) 141 Protein_504 helix-turn-helix domain-containing protein -
  CFU_RS25350 - 577085..577933 (+) 849 WP_081466393.1 YopT-type cysteine protease domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18051.14 Da        Isoelectric Point: 7.0169

>NTDB_id=41935 CFU_RS02475 WP_041741114.1 574438..574932(+) (ssb) [Collimonas fungivorans Ter331]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYIEG
RLQTRKWQDKDGAERYTTEIIADTMQMLGSRQGAGGSAPMDGGDYNSAPPARQQNTSAPAAPARQAPASRPAPNFSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=41935 CFU_RS02475 WP_041741114.1 574438..574932(+) (ssb) [Collimonas fungivorans Ter331]
ATGGCATCGGTCAATAAAGTCATCATCGTCGGCAATCTCGGCCGCGACCCGGAAACACGCTACATGCCGAACGGCGAAGC
CGTCACCAACATTGCCGTCGCCACCACGGAGAGCTGGAAAGACAAGAACAGCGGTGAGAAAAAAGAATTAACCGAGTGGC
ACCGCATCACCTTCTATCGCAAGCTGGCGGAGATCGCCGGCCAGTACCTGAAAAAAGGTTCGCAGATCTACATCGAAGGC
CGCCTGCAGACGCGCAAGTGGCAAGACAAGGATGGCGCCGAGCGCTACACCACCGAAATCATCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGTGCGGGCGGCAGTGCGCCTATGGATGGTGGCGACTACAACAGCGCGCCGCCGGCACGCCAGC
AAAACACCAGCGCCCCGGCTGCTCCGGCCCGCCAGGCGCCAGCTTCCCGGCCAGCACCGAATTTCTCGGATATGGATGAC
GATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.144

100

0.598
  ssb Neisseria gonorrhoeae MS11

55.367

100

0.598
  ssb Neisseria meningitidis MC58

54.598

100

0.579
  ssb Glaesserella parasuis strain SC1401

51.667

100

0.567

Multiple sequence alignment