Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | GWK37_RS09400 | Genome accession | NZ_CP048002 |
| Coordinates | 1872233..1872523 (-) | Length | 96 a.a. |
| NCBI ID | WP_169510469.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain CACC 316 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1867233..1877523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GWK37_RS09360 (GWK37_09365) | darA | 1867250..1867579 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| GWK37_RS09365 (GWK37_09370) | - | 1867592..1868032 (+) | 441 | WP_004264730.1 | YaaR family protein | - |
| GWK37_RS09370 (GWK37_09375) | holB | 1868044..1869033 (+) | 990 | WP_007409919.1 | DNA polymerase III subunit delta' | - |
| GWK37_RS09375 (GWK37_09380) | ricT | 1869036..1869863 (+) | 828 | WP_004264723.1 | competence/sporulation regulator complex protein RicT | - |
| GWK37_RS09380 (GWK37_09385) | yabA | 1869878..1870237 (+) | 360 | WP_115941243.1 | replication initiation-control protein YabA | - |
| GWK37_RS09385 (GWK37_09390) | - | 1870298..1871041 (+) | 744 | WP_004264717.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| GWK37_RS09390 (GWK37_09395) | - | 1871028..1871327 (+) | 300 | WP_063637080.1 | GIY-YIG nuclease family protein | - |
| GWK37_RS09395 (GWK37_09400) | rsmI | 1871302..1872183 (+) | 882 | WP_115941244.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| GWK37_RS09400 (GWK37_09405) | abrB | 1872233..1872523 (-) | 291 | WP_169510469.1 | transition state genes transcriptional regulator AbrB | Regulator |
| GWK37_RS09405 (GWK37_09410) | metG | 1873006..1874997 (+) | 1992 | WP_104679163.1 | methionine--tRNA ligase | - |
| GWK37_RS09410 (GWK37_09415) | - | 1875074..1875841 (+) | 768 | WP_021494159.1 | TatD family hydrolase | - |
| GWK37_RS09415 (GWK37_09420) | - | 1875976..1877301 (+) | 1326 | WP_115941251.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10753.57 Da Isoelectric Point: 6.3482
>NTDB_id=419236 GWK37_RS09400 WP_169510469.1 1872233..1872523(-) (abrB) [Bacillus velezensis strain CACC 316]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=419236 GWK37_RS09400 WP_169510469.1 1872233..1872523(-) (abrB) [Bacillus velezensis strain CACC 316]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
97.917 |
100 |
0.979 |