Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   GWK37_RS02630 Genome accession   NZ_CP048002
Coordinates   518749..519501 (-) Length   250 a.a.
NCBI ID   WP_022552879.1    Uniprot ID   -
Organism   Bacillus velezensis strain CACC 316     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513749..524501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK37_RS02605 (GWK37_02610) mreC 514185..515048 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  GWK37_RS02610 (GWK37_02615) mreB 515079..516092 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  GWK37_RS02615 (GWK37_02620) radC 516184..516879 (-) 696 WP_007408165.1 RadC family protein -
  GWK37_RS02620 (GWK37_02625) - 516911..517480 (-) 570 WP_012118105.1 Maf family protein -
  GWK37_RS02625 (GWK37_02630) - 517621..518622 (-) 1002 WP_025649687.1 SPOR domain-containing protein -
  GWK37_RS02630 (GWK37_02635) comC 518749..519501 (-) 753 WP_022552879.1 prepilin peptidase Machinery gene
  GWK37_RS02635 (GWK37_02640) - 519641..520933 (-) 1293 WP_115940675.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  GWK37_RS02640 (GWK37_02645) - 520992..523634 (-) 2643 WP_115940676.1 valine--tRNA ligase -
  GWK37_RS02645 (GWK37_02650) - 524087..524278 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27249.96 Da        Isoelectric Point: 9.4293

>NTDB_id=419213 GWK37_RS02630 WP_022552879.1 518749..519501(-) (comC) [Bacillus velezensis strain CACC 316]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=419213 GWK37_RS02630 WP_022552879.1 518749..519501(-) (comC) [Bacillus velezensis strain CACC 316]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCTGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCGAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment