Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GSQ62_RS08225 Genome accession   NZ_CP047984
Coordinates   2058305..2058769 (+) Length   154 a.a.
NCBI ID   WP_161889061.1    Uniprot ID   -
Organism   Pontibacter russatus strain BT326     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2053305..2063769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSQ62_RS08205 - 2053712..2055307 (-) 1596 WP_161889058.1 Rne/Rng family ribonuclease -
  GSQ62_RS08210 - 2055525..2056373 (-) 849 WP_237587077.1 tetratricopeptide repeat protein -
  GSQ62_RS08215 - 2056453..2056773 (-) 321 WP_262886655.1 HU family DNA-binding protein -
  GSQ62_RS08220 mutY 2057105..2058196 (+) 1092 WP_161889060.1 A/G-specific adenine glycosylase -
  GSQ62_RS08225 ssb 2058305..2058769 (+) 465 WP_161889061.1 single-stranded DNA-binding protein Machinery gene
  GSQ62_RS08230 gldE 2058796..2060163 (+) 1368 WP_237587079.1 gliding motility-associated protein GldE -
  GSQ62_RS08235 gldD 2060123..2060743 (+) 621 WP_161889062.1 gliding motility lipoprotein GldD -
  GSQ62_RS08240 recG 2060969..2063068 (+) 2100 WP_161889063.1 ATP-dependent DNA helicase RecG -
  GSQ62_RS08245 - 2063097..2063288 (-) 192 WP_161889064.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16647.31 Da        Isoelectric Point: 5.7002

>NTDB_id=419022 GSQ62_RS08225 WP_161889061.1 2058305..2058769(+) (ssb) [Pontibacter russatus strain BT326]
MASVNKVILIGNLGKDPEVRHLEGGIAVARFPIATSETFKDKSGQKQERTEWHNIVVWRGLAEVAEKYLRKGNSVYIEGK
LRTNNYQDKEGIQRYSTEIVADNMTMLGGRNDAGSGGEGHYQASSSPASSSGGNAGNTGNASAFQNDEPDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=419022 GSQ62_RS08225 WP_161889061.1 2058305..2058769(+) (ssb) [Pontibacter russatus strain BT326]
ATGGCAAGTGTAAACAAAGTAATCCTGATCGGAAACCTGGGCAAAGACCCGGAAGTACGCCACCTCGAAGGCGGCATAGC
CGTAGCGCGTTTCCCGATCGCCACTTCTGAGACGTTTAAAGACAAAAGCGGCCAGAAGCAGGAAAGAACCGAATGGCACA
ACATTGTAGTCTGGAGAGGCCTCGCTGAGGTGGCGGAAAAGTACCTCAGGAAAGGCAATTCCGTCTATATAGAAGGCAAG
CTCCGGACAAACAACTACCAGGACAAGGAGGGCATCCAGCGCTACAGCACCGAGATTGTGGCGGACAACATGACCATGCT
GGGCGGCCGCAATGACGCAGGCAGCGGCGGCGAAGGCCATTACCAGGCGTCCTCCTCCCCGGCCTCCTCCTCGGGCGGCA
ACGCGGGCAATACCGGCAACGCATCCGCCTTCCAGAACGACGAGCCGGACGACCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.444

100

0.519
  ssb Neisseria meningitidis MC58

45.665

100

0.513
  ssb Neisseria gonorrhoeae MS11

45.665

100

0.513
  ssb Vibrio cholerae strain A1552

57.851

78.571

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.682

100

0.39

Multiple sequence alignment