Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   GWK28_RS01610 Genome accession   NZ_CP047973
Coordinates   344189..348034 (+) Length   1281 a.a.
NCBI ID   WP_032013894.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339189..353034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS01580 (GWK28_01580) gmk 339461..340090 (-) 630 WP_000015937.1 guanylate kinase -
  GWK28_RS01585 (GWK28_01585) ispH 340213..341163 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GWK28_RS01590 (GWK28_01590) fimU 341333..341806 (+) 474 WP_032013891.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GWK28_RS01595 (GWK28_01595) pilV 341800..342360 (+) 561 WP_086374083.1 type IV pilus modification protein PilV Machinery gene
  GWK28_RS01600 (GWK28_01600) pilW 342361..343362 (+) 1002 WP_032013893.1 PilW family protein Machinery gene
  GWK28_RS01605 (GWK28_01605) pilX 343359..344177 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GWK28_RS01610 (GWK28_01610) pilY1 344189..348034 (+) 3846 WP_032013894.1 PilC/PilY family type IV pilus protein Machinery gene
  GWK28_RS01615 (GWK28_01615) pilY2 348047..348529 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  GWK28_RS01620 (GWK28_01620) pilE 348526..348951 (+) 426 WP_005127886.1 type IV pilin protein Machinery gene
  GWK28_RS01625 (GWK28_01625) rpsP 349098..349349 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  GWK28_RS01630 (GWK28_01630) rimM 349369..349917 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  GWK28_RS01635 (GWK28_01635) trmD 349963..350703 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GWK28_RS01640 (GWK28_01640) rplS 350911..351279 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  GWK28_RS01645 (GWK28_01645) - 351332..352273 (-) 942 WP_097355459.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1281 a.a.        Molecular weight: 137533.13 Da        Isoelectric Point: 7.7527

>NTDB_id=418896 GWK28_RS01610 WP_032013894.1 344189..348034(+) (pilY1) [Acinetobacter baumannii strain DETAB-P2]
MKLKLKNFKPNNLWYAVCSSSMIFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTSNSYGENRLAMLKDGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLKSGGTTPSAHAYAEAAAYLM
GTTTYSETNYAIRKESYIKRVRRFDNKTEYSSCTNSSQIDINTLSQSCRSNGWSSWTTFNPGVNTLTDYETSSDWTYYYT
YYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNATNSNAVYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTRSAS
VMSTALGSTFGADFNCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLSSRT
QSDRKGDDACSPNQSTNAVAAPGYGNGGFFPTQSSQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEYGYL
RAFEPNPANTYLTWRGNLKKYHVVLSGANAGAFEANSGGLVYNASGAFRTGTKDYWNSSTYTDGGKVFLGGSYANVPLPI
AGQPETRDAEGNITKYYYAVQSKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAVPPEGTNPFDTVANTASYVLGKFDP
STGQNILKAFPISLKLKILNYLGYSTDINATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDDNGNLTSAREQSILY
GTMEGGLHIVDASSGIEQMVFVPADILNDSVASKALVVGQSDASAPAHGMDGAWVSDPAYNITTVGSGSSAVSKVTAKQM
NIYGGMRMGGSSYYGLDVLSPTSPKLLFRIGADQTDYSRMGQSWSKPVLANIRYNGSIRRVLIVGGGYDQCYEKPNITLT
DACFTNGKAKGNAVYIIDAKTGQRLWWTSDTGSNTDNANMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRVDLNNNQ
TKTNSTYSSFGVRVVRLANLATNDSTYDGTNDYTGGNAPRFYEPPTVTIHDYGIHTFITVGIASGDRSTPLDVYPLTGRE
GMTPASALSGRPVNNVYGIIDRDFVKKNLMSLTDNQLETKDITRTGLRKNPQILRTGETRVAQIFFPTTGVGKGGWYRSL
SSTSDGTEKANNSFRIKGGLKAFEEPMAITGNLIIPVYDPQGTGIVAADPCLPRVVGETDRQTYCLPFGACLNPDGTINS
NKENPSGFQTKTGSNCPAGVSECNTNVIGAGIRNITFVPKRDEPPVTNSCGKLQLSGNENGTGEWQCTSHLLPVRWYERY
R

Nucleotide


Download         Length: 3846 bp        

>NTDB_id=418896 GWK28_RS01610 WP_032013894.1 344189..348034(+) (pilY1) [Acinetobacter baumannii strain DETAB-P2]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCGTCTGTTCAAGCTCAATGATATTCACATGGCT
GATGACAAGCTCTGTGGTGCAAGCAAGTGATTTACAAATTTATGCCTCACCTACAGCAGGTAAAAAAACAATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAGCAATAGTTATGGTGAAAACCGTTTGGCTATGCTTAAAGATGGTATGAATGCT
TTTTTAGCTAGCAATAACCCTGTCTTAAATGATACGCGAGTAGGTTTAGGAAATTTCTCGGCAAATGGTGATAGCCGAAG
TGGACAAATTTTAGTGGCTGCTGCCCCTTTAGGAGATGCGAGTACTTTAAATACGGTAGGCTCACAACGTTATAAATTAA
AACAAGCTGTTGCTAATTTAAAATCAGGGGGCACGACACCTTCAGCCCATGCTTATGCTGAAGCAGCTGCTTACTTAATG
GGAACAACCACATATTCAGAAACGAATTATGCTATTCGTAAAGAGAGTTATATTAAACGTGTAAGAAGATTTGATAATAA
AACTGAATACTCTTCTTGCACTAATTCTTCACAAATTGATATTAATACCTTAAGTCAATCATGTCGTTCTAATGGCTGGA
GTAGCTGGACCACGTTCAATCCAGGAGTAAATACATTAACAGATTATGAGACTTCATCTGACTGGACTTATTACTATACT
TATTACTACACCACTTTTAATTATGCTGTAGCAAATGCAGATAGCGGTATTCCAAAATCTAAATCAAACGATACAGCTAG
CAATCCGAATATTGTTGTAGACCGAAATGCTACTAACTCCAATGCAGTGTATCAGTCACCTTTACCTGCAGTAGCGAATC
GTCAGAGTTGTGATGGACAAGGTATTTACTTCTTATCGGATGGCGAACCGAACAATACAACAAATACACGTTCGGCAAGT
GTTATGTCGACTGCTTTAGGTAGTACTTTTGGAGCTGATTTTAATTGTTCTGGAGGTTTATCTAACACTACGGCAGACTC
TGGTTGGGCTTGTATGGGGGAGTTTGCAAAAAGATTATTTGATAAAACAAAGAATCCTGCCGGAGTCTCTATTCAAACAG
CATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTGAGTTCTTCTGATGTAAAAAATGCCTGCCGTTTAAGTTCGAGAACC
CAGTCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAATCTACAAATGCGGTAGCTGCACCAGGTTATGGAAATGG
TGGTTTTTTCCCTACTCAGAGTTCACAAGGTGTAACAGACAGCGTTATCGCATTTATTAATAATTTAGATAAAGTTCCTT
TAGAACCCTTAACCACAGGTGCTATCTCAGTTCCATATGATGCATTGAATCCCAAAAATTTACAGGAATATGGTTATTTA
CGAGCTTTTGAGCCAAATCCAGCTAACACGTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGTTTTATCTGG
AGCGAATGCAGGTGCTTTTGAGGCCAATTCTGGCGGATTAGTCTACAATGCAAGTGGGGCTTTTAGGACTGGAACAAAGG
ATTATTGGAATAGCTCTACTTATACTGACGGAGGCAAAGTCTTTTTAGGTGGTTCATATGCGAATGTGCCTTTACCCATT
GCTGGGCAACCTGAAACACGTGATGCAGAAGGAAATATCACAAAATATTATTACGCAGTACAAAGTAAAATCCGCAACTT
ATTTACTGATGTTTCCGCCGTTGCAGCAGATGGTAGCTTAACGAAAATTTCAACTTCTGGAACTAATTTGCTAAAAATTC
CAGCTGTTCCACCAGAAGGAACTAATCCTTTTGATACGGTGGCTAATACAGCAAGTTATGTTTTAGGTAAATTTGATCCA
TCAACTGGACAAAATATTTTAAAAGCTTTTCCTATAAGCTTGAAATTAAAAATATTAAATTATTTAGGTTATTCAACAGA
TATTAATGCAACAACTCTGCCTTCATCTTTGGTTACATCGAATGAACCTTATTTATCGATGGGGGGAAGTATTCACTCTT
TACCGGTTCAACTAACCTACAATGGAACACTAGATGATAATGGGAATTTAACATCTGCCCGAGAACAATCCATCCTCTAT
GGAACCATGGAAGGCGGGTTACATATTGTGGATGCTTCATCTGGTATTGAGCAAATGGTCTTTGTTCCTGCAGATATTTT
AAATGATTCAGTTGCTTCCAAAGCTTTAGTTGTTGGTCAAAGTGATGCTTCAGCTCCCGCTCATGGTATGGACGGAGCTT
GGGTATCTGATCCAGCCTATAATATTACTACAGTGGGAAGTGGTAGCTCGGCAGTATCAAAAGTAACTGCAAAGCAAATG
AATATTTATGGCGGCATGCGCATGGGGGGAAGTAGCTACTACGGACTAGATGTATTAAGCCCTACTTCACCGAAACTGCT
TTTTAGAATAGGGGCAGACCAGACTGACTATAGCCGTATGGGTCAAAGCTGGTCTAAACCCGTACTCGCGAACATCCGTT
ATAACGGTTCTATTAGACGCGTCCTGATTGTTGGCGGTGGTTATGATCAGTGTTATGAAAAACCAAATATTACGTTGACT
GACGCTTGCTTTACCAATGGAAAAGCAAAAGGAAATGCTGTCTATATTATTGACGCAAAAACTGGTCAGCGTTTGTGGTG
GACAAGTGATACAGGTTCTAATACTGATAACGCCAATATGAAGCATAGTATTGTTAGCCGTATTAGTACTTTAGACCGTG
ATGCTGATGGCTTAGTCGACCATCTATATTTTGGAGATTTAGGCGGACAAATTTTTCGCGTGGACCTTAATAATAATCAG
ACAAAAACCAATTCGACCTATAGCAGTTTTGGTGTCAGAGTTGTGCGTTTAGCGAATTTAGCAACAAATGATTCAACTTA
TGATGGCACAAATGATTATACAGGTGGGAATGCTCCTCGTTTTTATGAGCCTCCAACAGTAACGATCCACGATTATGGAA
TTCACACTTTTATTACAGTAGGTATTGCATCAGGAGACCGTAGTACACCTTTAGACGTTTACCCACTCACAGGCCGTGAA
GGTATGACGCCTGCAAGTGCATTAAGTGGACGTCCTGTAAATAATGTATATGGAATTATTGATAGAGACTTTGTTAAAAA
GAACTTAATGTCTTTAACTGATAATCAGCTTGAAACAAAAGATATTACACGGACAGGCTTAAGAAAAAATCCACAAATTC
TAAGAACAGGTGAAACAAGAGTAGCTCAAATTTTCTTCCCCACTACAGGAGTAGGTAAAGGTGGTTGGTATCGCTCGCTT
TCTAGTACGAGCGATGGTACAGAAAAAGCTAATAATAGTTTTCGTATTAAAGGAGGACTCAAAGCTTTTGAGGAACCAAT
GGCAATTACGGGTAATTTAATTATTCCAGTTTATGACCCTCAAGGAACGGGAATTGTTGCGGCAGATCCTTGCCTACCTC
GTGTTGTGGGAGAAACAGACCGACAAACTTATTGTTTACCATTTGGTGCTTGTCTTAATCCGGATGGAACCATTAATTCA
AATAAAGAAAACCCGAGCGGGTTTCAAACAAAAACTGGTAGTAACTGTCCAGCTGGAGTCTCTGAATGTAATACAAATGT
CATTGGTGCAGGTATTCGTAATATCACATTTGTTCCAAAAAGAGATGAACCTCCTGTGACTAATAGTTGTGGCAAATTAC
AGCTGTCTGGAAACGAGAACGGAACAGGTGAGTGGCAGTGTACAAGTCATTTACTTCCTGTGCGCTGGTATGAGCGCTAT
CGCTAG

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(712-961)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

88.733

100

0.891

Multiple sequence alignment