Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GWK28_RS01605 Genome accession   NZ_CP047973
Coordinates   343359..344177 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338359..349177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS01570 (GWK28_01570) - 338941..339071 (-) 131 Protein_299 hypothetical protein -
  GWK28_RS01575 (GWK28_01575) rpoZ 339110..339388 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GWK28_RS01580 (GWK28_01580) gmk 339461..340090 (-) 630 WP_000015937.1 guanylate kinase -
  GWK28_RS01585 (GWK28_01585) ispH 340213..341163 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GWK28_RS01590 (GWK28_01590) fimU 341333..341806 (+) 474 WP_032013891.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GWK28_RS01595 (GWK28_01595) pilV 341800..342360 (+) 561 WP_086374083.1 type IV pilus modification protein PilV Machinery gene
  GWK28_RS01600 (GWK28_01600) pilW 342361..343362 (+) 1002 WP_032013893.1 PilW family protein Machinery gene
  GWK28_RS01605 (GWK28_01605) pilX 343359..344177 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GWK28_RS01610 (GWK28_01610) pilY1 344189..348034 (+) 3846 WP_032013894.1 PilC/PilY family type IV pilus protein Machinery gene
  GWK28_RS01615 (GWK28_01615) pilY2 348047..348529 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  GWK28_RS01620 (GWK28_01620) pilE 348526..348951 (+) 426 WP_005127886.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=418895 GWK28_RS01605 WP_000149374.1 343359..344177(+) (pilX) [Acinetobacter baumannii strain DETAB-P2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=418895 GWK28_RS01605 WP_000149374.1 343359..344177(+) (pilX) [Acinetobacter baumannii strain DETAB-P2]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGACTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCCGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment