Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   GWK28_RS01590 Genome accession   NZ_CP047973
Coordinates   341333..341806 (+) Length   157 a.a.
NCBI ID   WP_032013891.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336333..346806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS01565 (GWK28_01565) - 336795..338900 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  GWK28_RS01570 (GWK28_01570) - 338941..339071 (-) 131 Protein_299 hypothetical protein -
  GWK28_RS01575 (GWK28_01575) rpoZ 339110..339388 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GWK28_RS01580 (GWK28_01580) gmk 339461..340090 (-) 630 WP_000015937.1 guanylate kinase -
  GWK28_RS01585 (GWK28_01585) ispH 340213..341163 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GWK28_RS01590 (GWK28_01590) fimU 341333..341806 (+) 474 WP_032013891.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GWK28_RS01595 (GWK28_01595) pilV 341800..342360 (+) 561 WP_086374083.1 type IV pilus modification protein PilV Machinery gene
  GWK28_RS01600 (GWK28_01600) pilW 342361..343362 (+) 1002 WP_032013893.1 PilW family protein Machinery gene
  GWK28_RS01605 (GWK28_01605) pilX 343359..344177 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16855.46 Da        Isoelectric Point: 8.5355

>NTDB_id=418892 GWK28_RS01590 WP_032013891.1 341333..341806(+) (fimU) [Acinetobacter baumannii strain DETAB-P2]
MRGIIPQEGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=418892 GWK28_RS01590 WP_032013891.1 341333..341806(+) (fimU) [Acinetobacter baumannii strain DETAB-P2]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCGAT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment