Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FX986_RS09735 Genome accession   NZ_CP047970
Coordinates   2329855..2331393 (+) Length   512 a.a.
NCBI ID   WP_077379610.1    Uniprot ID   -
Organism   Cobetia marina strain GPM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2324855..2336393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX986_RS09705 glnK 2325410..2325748 (-) 339 WP_024951507.1 P-II family nitrogen regulator -
  FX986_RS09710 - 2325899..2327146 (-) 1248 WP_077379618.1 ammonium transporter -
  FX986_RS09715 - 2327179..2327517 (-) 339 WP_065392452.1 P-II family nitrogen regulator -
  FX986_RS09720 - 2327955..2328329 (+) 375 WP_084209517.1 accessory factor UbiK family protein -
  FX986_RS09725 - 2328416..2328694 (-) 279 WP_205632716.1 CBU_0592 family membrane protein -
  FX986_RS09730 - 2329221..2329502 (+) 282 WP_191236443.1 hypothetical protein -
  FX986_RS09735 comM 2329855..2331393 (+) 1539 WP_077379610.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FX986_RS09740 - 2331422..2332453 (-) 1032 WP_077379608.1 DUF4105 domain-containing protein -
  FX986_RS09745 - 2332464..2333615 (-) 1152 WP_191236444.1 pyridoxal phosphate-dependent aminotransferase -
  FX986_RS09750 - 2333704..2334234 (-) 531 WP_157109506.1 hypothetical protein -
  FX986_RS09755 - 2334222..2335232 (-) 1011 WP_191236445.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54871.12 Da        Isoelectric Point: 7.4754

>NTDB_id=418846 FX986_RS09735 WP_077379610.1 2329855..2331393(+) (comM) [Cobetia marina strain GPM2]
MSLAMLRTRASLGLEAPEVQVEVHLSNGLPGLSIVGLPEAAVKESRERVRSALLNAGFEFPARRITLNLAPADLPKEGGR
FDLPIALGILVASGQVPEEAVAQIECLGELALDGSIRSVTGVLPAALCCRKAGRTLVVPRGNADEAALAEQLDVLSVGHL
LELVAHLLGRERITPHVCSVTPQARLPEPDLSEVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTMLASRLSGILPPLGE
AEALEVAAVRSVCGMPIMERWGQRPFRAPHHTASGVALVGGGSRPRPGEVSLAHHGVLFLDELAEFDRGVLEVMREPLES
GRILISRASHQRRFPARFQLVAAMNPCPCGYLGDSRRNCSCTPAQIQRYQARLSGPLLDRIDLQVEVPGLPAEELTSATP
GEASDAVRERVLAARARQLARGGLNAHLDTHALEAACQLEDGERQWLAGVLSRLNLSARAYHRVLRVALTLSDLIAQDGV
QRPQLMEAIGYRQLDRMMGRDPARPGAEQRSA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=418846 FX986_RS09735 WP_077379610.1 2329855..2331393(+) (comM) [Cobetia marina strain GPM2]
ATGTCATTGGCAATGTTGCGCACGCGCGCATCTCTTGGTCTTGAAGCTCCGGAGGTGCAGGTAGAGGTACACCTCTCCAA
CGGGCTGCCGGGGCTCTCCATCGTTGGCTTGCCGGAAGCGGCGGTGAAGGAAAGTCGTGAGCGAGTGCGCAGCGCATTGC
TCAATGCAGGCTTCGAGTTTCCAGCGCGCCGAATCACCCTCAATCTGGCCCCGGCTGACCTGCCCAAGGAGGGTGGGCGC
TTTGATCTGCCGATCGCACTGGGCATCCTGGTGGCATCCGGTCAGGTGCCGGAAGAGGCCGTGGCGCAGATCGAGTGTCT
GGGCGAGTTGGCGCTCGATGGCAGCATTCGCTCCGTCACTGGCGTGCTGCCTGCTGCGCTCTGCTGTCGCAAGGCCGGGC
GCACCCTGGTGGTGCCGCGTGGCAATGCCGATGAGGCCGCGCTGGCGGAACAGCTGGATGTGCTGTCCGTGGGCCATCTG
CTGGAGTTGGTGGCGCACCTTCTCGGGCGTGAGAGGATCACGCCGCATGTCTGTTCCGTCACTCCTCAGGCGCGACTCCC
GGAGCCGGACTTGAGCGAGGTGCGTGGCCAGCATCAGGCGCGGCGTGCGCTGGAGATTGCCGCTGCGGGAGGCCACAACC
TGCTGTTCGCGGGGCCGCCGGGTACGGGCAAGACGATGCTGGCCAGTCGCCTCTCCGGCATTCTGCCGCCGCTGGGGGAG
GCCGAGGCCCTGGAAGTCGCGGCGGTACGCTCGGTCTGCGGGATGCCGATCATGGAGCGCTGGGGCCAGCGGCCCTTCCG
GGCGCCGCATCATACCGCCAGTGGTGTCGCGCTGGTCGGGGGTGGCTCCAGACCGCGTCCGGGAGAGGTGTCGCTGGCCC
ATCATGGCGTGCTGTTTCTGGACGAGCTGGCGGAATTTGATCGTGGTGTGCTGGAAGTGATGCGTGAGCCGCTGGAGAGC
GGCCGCATCCTCATCTCGCGTGCCAGCCACCAGCGGCGCTTTCCGGCACGTTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCGTGCGGCTATCTTGGTGACAGCCGTCGCAACTGCAGTTGCACGCCGGCCCAGATCCAGCGCTATCAGGCGCGCCTAT
CTGGCCCGCTGCTGGACCGTATCGATCTGCAGGTCGAGGTACCGGGACTGCCTGCCGAGGAGCTGACGTCCGCGACCCCC
GGTGAGGCCTCGGACGCAGTGCGCGAACGGGTGCTGGCAGCCCGCGCTCGTCAATTGGCCCGCGGCGGGCTCAATGCCCA
TCTCGACACCCATGCCCTGGAAGCCGCCTGCCAGCTGGAGGACGGCGAGCGTCAGTGGCTGGCCGGCGTGCTGTCGCGTC
TCAATCTCTCGGCGCGTGCCTATCACAGGGTCTTGCGTGTCGCGCTGACGTTGAGCGATCTCATTGCGCAGGATGGCGTG
CAGCGGCCCCAGCTGATGGAAGCCATCGGCTATCGTCAGCTGGACCGAATGATGGGGAGAGACCCGGCCCGCCCGGGAGC
GGAACAGCGCAGCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.89

97.852

0.537
  comM Vibrio campbellii strain DS40M4

54.382

98.047

0.533
  comM Glaesserella parasuis strain SC1401

53.346

99.219

0.529
  comM Haemophilus influenzae Rd KW20

52.456

99.414

0.521
  comM Legionella pneumophila str. Paris

51.085

99.023

0.506
  comM Legionella pneumophila strain ERS1305867

51.085

99.023

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.363

96.875

0.439

Multiple sequence alignment