Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FX986_RS08450 Genome accession   NZ_CP047970
Coordinates   2044798..2045439 (-) Length   213 a.a.
NCBI ID   WP_077373360.1    Uniprot ID   -
Organism   Cobetia marina strain GPM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2039798..2050439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX986_RS08435 - 2040203..2040964 (-) 762 WP_240499633.1 lysophospholipid acyltransferase family protein -
  FX986_RS08440 - 2040983..2041867 (-) 885 WP_077373366.1 sugar nucleotide-binding protein -
  FX986_RS08445 - 2041930..2044434 (-) 2505 WP_191237764.1 bifunctional diguanylate cyclase/phosphodiesterase -
  FX986_RS08450 ssb 2044798..2045439 (-) 642 WP_077373360.1 single-stranded DNA-binding protein Machinery gene
  FX986_RS08455 - 2045527..2046942 (-) 1416 WP_191237765.1 MFS transporter -
  FX986_RS08460 uvrA 2047148..2050078 (+) 2931 WP_191237766.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22937.00 Da        Isoelectric Point: 6.2336

>NTDB_id=418841 FX986_RS08450 WP_077373360.1 2044798..2045439(-) (ssb) [Cobetia marina strain GPM2]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEIAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGGGFSGGGRPQQAPQQGGQYGGQQQAAAAPQQGGQFGGQPPAP
QQGGNFGGQPPAPHTPPPAQQPAHQPPQQNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 642 bp        

>NTDB_id=418841 FX986_RS08450 WP_077373360.1 2044798..2045439(-) (ssb) [Cobetia marina strain GPM2]
ATGGCTCGCGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAGGATCCGGAAGTCCGTTTCACTCCGTCCGGTAG
TGCGGTGTGCAACCTCAACCTCGCCACCACGGATACCTGGAATGACCGTCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCGGAAATCGCTCAGCAATACGTCAAGAAAGGCTCACGCCTCTATATCGAA
GGTCGTCTACAGACGCGCAAGTGGCAGGATCAGAACGGCAACGACCGCTACAGCACCGAAATCGTCGCCAATGACATGCA
GATGCTGGATACCCGTGGTGAAGGCGGCGGCGGTGGCGGCTTCAGTGGCGGCGGTCGTCCCCAGCAGGCACCTCAGCAAG
GTGGTCAGTATGGTGGCCAGCAGCAGGCCGCGGCAGCTCCGCAGCAGGGTGGCCAGTTCGGCGGCCAGCCGCCGGCACCG
CAGCAGGGTGGCAACTTCGGTGGTCAGCCGCCGGCGCCGCACACTCCGCCTCCGGCTCAGCAGCCCGCTCATCAGCCTCC
TCAGCAGAACTCGCAGAACAACAATTTCGGCGCGCCGCCGGCTGGCAGCTTTGACGATTTCGATGATGAGATTCCGTTCT
GA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.848

100

0.498
  ssb Glaesserella parasuis strain SC1401

45.714

98.592

0.451
  ssb Neisseria gonorrhoeae MS11

44.976

98.122

0.441
  ssb Neisseria meningitidis MC58

44.498

98.122

0.437

Multiple sequence alignment