Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBG_RS17925 Genome accession   NC_015761
Coordinates   3790020..3791540 (-) Length   506 a.a.
NCBI ID   WP_000058938.1    Uniprot ID   A0A248KE86
Organism   Salmonella bongori NCTC 12419     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3785020..3796540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBG_RS17915 (SBG_3442) hdfR 3788702..3789550 (-) 849 WP_079775151.1 HTH-type transcriptional regulator HdfR -
  SBG_RS17920 (SBG_3443) maoP 3789657..3789995 (+) 339 WP_000840993.1 macrodomain Ori organization protein MaoP -
  SBG_RS17925 (SBG_3444) comM 3790020..3791540 (-) 1521 WP_000058938.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBG_RS17930 ilvL 3791891..3791989 (+) 99 WP_001311244.1 ilv operon leader peptide -
  SBG_RS22970 ilvX 3792076..3792126 (+) 51 WP_193385827.1 peptide IlvX -
  SBG_RS17935 (SBG_3445) ilvG 3792129..3793775 (+) 1647 WP_001012574.1 acetolactate synthase 2 catalytic subunit -
  SBG_RS17940 (SBG_3446) ilvM 3793772..3794035 (+) 264 WP_000983258.1 acetolactate synthase 2 small subunit -
  SBG_RS17945 (SBG_3447) ilvE 3794053..3794982 (+) 930 WP_000208525.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55006.16 Da        Isoelectric Point: 6.9943

>NTDB_id=41876 SBG_RS17925 WP_000058938.1 3790020..3791540(-) (comM) [Salmonella bongori NCTC 12419]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTASHLEDYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLIGKEGCFIADHL
QTVCAFLEGKCPLDRPLAPDMASPMAIADLSDVIGQEQGKRGLEIAAAGEHNLLLIGPPGTGKTMLASRLSGILPPLSNE
EALESAAILSLVNCNTLQKQWQQRPFRSPHHSASLTAMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLNKLSGPFLDRFDLSLEIPLPPPGILSQHAIKG
ENSATVKTRVIAARERQYQRQNKLNARLESGEIHKYCTLHHDDARWLEDTLIHLGLSIRAWQRLLKVARTIADIEQADEI
TRQHLQEAVSYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=41876 SBG_RS17925 WP_000058938.1 3790020..3791540(-) (comM) [Salmonella bongori NCTC 12419]
ATGTCATTGTCGATTGTTCATACCCGCGCCGCACTTGGTGTCAATGCGCCGCCTATCACTATAGAGGTGCATATCAGCAA
TGGGCTACCGGGGTTAACCATGGTTGGTCTACCAGAAACCACGGTAAAAGAGGCGCGGGACCGGGTACGCAGCGCAATCA
TTAATAGCGGATATGAATTTCCGGCTAAAAAGATAACCATTAACCTTGCGCCGGCTGATCTGCCGAAAGAAGGCGGAAGG
TACGATCTTCCTATTGCAATTGCGCTTCTGGCTGCCTCTGAGCAGCTTACAGCGTCACATCTTGAGGATTACGAGTTAGT
AGGTGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGCGCGATATCAAGCGCAACTGAAGCTATCAGAGCCGGCA
GAAATATTATTGTCGCAACAGAAAACGCGGCAGAAGTTGGTCTCATCGGCAAAGAAGGATGTTTTATTGCCGATCATCTC
CAGACCGTCTGCGCCTTTCTTGAAGGAAAATGTCCTCTGGATAGACCATTAGCCCCGGATATGGCATCACCTATGGCAAT
CGCCGACCTTAGTGATGTGATAGGCCAGGAACAGGGTAAACGCGGTCTGGAAATCGCTGCGGCAGGCGAACATAATTTGT
TATTGATAGGCCCTCCAGGCACGGGTAAAACCATGCTAGCCAGCCGACTAAGCGGTATTCTTCCACCATTAAGCAATGAA
GAGGCGTTAGAAAGCGCCGCGATCCTTAGTCTGGTTAATTGCAATACACTACAAAAACAGTGGCAACAGCGACCTTTTCG
CTCACCCCATCATAGCGCCTCACTCACTGCAATGGTTGGCGGCGGCGCAATTCCCGCACCAGGAGAGATATCGCTGGCGC
ACAACGGAATTTTATTCCTTGATGAATTGCCTGAGTTTGAGCGACGCACGCTGGATGCACTACGTGAACCGATTGAATCC
GGCCAAATTCACCTGTCCCGTACCAGAGCGAAAATTACGTACCCTGCCAGATTTCAGTTAATCGCTGCAATGAACCCCAG
CCCAACGGGGCATTATCAGGGAAATCATAATCGTTGCTCGCCGGAACAGACGCTACGTTACCTTAACAAGCTGTCAGGTC
CGTTTCTTGATCGGTTTGATTTGTCTCTTGAAATACCACTTCCCCCACCTGGCATTCTTAGCCAGCACGCTATAAAAGGT
GAGAACAGCGCTACGGTAAAAACGCGGGTCATTGCCGCTCGTGAACGACAGTACCAACGCCAGAATAAGTTAAACGCACG
TCTGGAAAGTGGAGAGATCCACAAATACTGCACGTTACATCACGATGATGCTCGCTGGCTTGAAGATACGCTGATACATC
TTGGATTATCAATTCGAGCCTGGCAGCGCCTGTTAAAGGTAGCCAGAACGATTGCCGATATAGAGCAGGCAGACGAGATC
ACACGTCAACATTTACAGGAAGCGGTGAGTTATCGAGCGATAGACAGACTATTAATTCACCTACAAAAATTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248KE86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.513

100

0.591
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

57.57

99.209

0.571
  comM Legionella pneumophila str. Paris

48.008

99.209

0.476
  comM Legionella pneumophila strain ERS1305867

48.008

99.209

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.849

99.605

0.437

Multiple sequence alignment