Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   M594_RS08575 Genome accession   NZ_CP047883
Coordinates   1788411..1790378 (-) Length   655 a.a.
NCBI ID   WP_173876576.1    Uniprot ID   A0A6M9FBU6
Organism   Streptococcus mitis strain S022-V3-A4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1783411..1795378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08560 (M594_08600) cps4B 1783929..1784660 (-) 732 WP_173876573.1 capsular polysaccharide biosynthesis protein Cps4B -
  M594_RS08565 (M594_08605) - 1784662..1786107 (-) 1446 WP_173876574.1 LCP family protein -
  M594_RS08570 (M594_08610) amiA3 1786303..1788264 (-) 1962 WP_173876575.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS08575 (M594_08615) amiA 1788411..1790378 (-) 1968 WP_173876576.1 peptide ABC transporter substrate-binding protein Regulator
  M594_RS08580 (M594_08620) - 1790546..1792156 (-) 1611 WP_173876577.1 glycoside hydrolase family 13 protein -
  M594_RS08585 (M594_08625) - 1792309..1793793 (+) 1485 WP_173876578.1 DUF1846 domain-containing protein -
  M594_RS08590 (M594_08630) - 1793888..1794370 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72562.28 Da        Isoelectric Point: 5.3065

>NTDB_id=418274 M594_RS08575 WP_173876576.1 1788411..1790378(-) (amiA) [Streptococcus mitis strain S022-V3-A4]
MKSKKWLLGAGVTLSAAFLFAACGKSEKNADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLLQDSIKGLAAYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGKDYGTPTPSSILYNGPYLLKSLTSKSAIEYEKNPNYWDK
DNVKIDSIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
EEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQEQLVSYGDQWKDVA
LTDGKDTIYNPEKAKAAFAKAKTELQAKGVAFPIRLDIPVEQTDVIAVQQTNSLKQSIESTLGTDNVIIDVLQMTDNEKM
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQKDVVTTKEYEEALKKWQKEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=418274 M594_RS08575 WP_173876576.1 1788411..1790378(-) (amiA) [Streptococcus mitis strain S022-V3-A4]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCGGGAGTGACCTTGAGTGCGGCCTTTCTTTTTGCAGCTTGTGGCAAAAGCGA
AAAGAATGCGGACGCTCCTAAAACATTTTCTTATGTCTACGCTATGGATCCATCATCTTTGGACTACAGTGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCAAACGTTGTCGATGGCCTTTTGGAAAATGATAAGTATGGAAACTTAATTCCATCG
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGTTTGACTTATACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGAGGGTGAAGAGTATGCCGAAGTCAAGGCTCAAGACTTTGTTACAGGTTTGAAACATGCAGCTGATGGTAAATCAGACG
GTCTCTCTCTCCTTCAAGATTCTATTAAAGGATTGGCCGCCTATATCAGTGGTGAAAGTAACGACTTTTCTACTGTAGGT
GTAAAAGCTGTTGATGATTACACGGTTGAATATACGCTCAACAAACCAGAAAGTTTCTGGAATTCTAAAGTCACAACTGC
AACCATGCTTCCAGTTAATGAAGAATTTCTGAATTCTAAAGGAAAAGACTACGGAACTCCTACTCCGTCAAGTATTCTTT
ATAATGGTCCTTATCTATTGAAATCATTGACGTCAAAATCTGCTATCGAATATGAAAAAAATCCAAACTACTGGGATAAG
GACAATGTTAAGATTGACAGCATTAAACTAACCTTCTATGATGGATCAGACCAAGAATCCTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCTCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCCACTAAGAAAGAATACGGAGATAAGATTG
TCTACAGTCCACAAGAAGCGACAAGCTACTATCTCACTGTTAACGTAAATCGCCAGTCTTACAATAAAACAGCCAAAACC
GAAGAGGCTCAAAAAACATCAACAAAAGAAGCTCTTCTCAATAAAAACTTCCGTCAAGCCTTGAACTTTGCCCTTGATCG
TCACTCTTATACGGCTCAGTTGAACGGGGAAGAAGGTGCGGACAAGATTATTCGTAATAGCCTAGTGCCTCATGACTATG
TCCAAGTTGGTGAAAAGACCTTTGGTGAACTGGCTCAAGAGCAGTTGGTTTCTTATGGAGACCAGTGGAAAGATGTAGCT
TTGACAGATGGTAAGGATACGATTTATAATCCAGAAAAAGCCAAGGCTGCCTTTGCAAAAGCAAAGACAGAATTGCAAGC
AAAGGGTGTGGCCTTCCCAATTCGTTTGGATATTCCGGTTGAACAAACAGATGTGATTGCTGTCCAGCAAACTAACTCAC
TTAAGCAATCTATCGAATCAACACTTGGTACTGATAATGTCATTATCGATGTCCTTCAAATGACTGATAATGAAAAAATG
AGCATCACGTCTCAAGCTAAGGTTCCAGCACAAAAAGACTATGATTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTCAACATTCTCGATGCTAAGAAGGGTTCTGCTCTTAAACACTTGGGGATTACTCGTGGAAAAGATC
CAGAAGTGATGGCTCAAGTTGGACTGGACGAATATAAGAAACTCTTGGACGATGCTGCAGCTGAAACAAGTGACCTCAAT
AAGCGTTATGAAAAATACGCTAAAGCTCAAGCTTGGGTATCGGATAGCTCACTTTTAATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGTACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGATCCATTTGTATTCA
AAGGCTTGGAGTTGCAAAAGGATGTTGTGACTACAAAAGAATATGAAGAAGCTCTCAAGAAATGGCAGAAAGAAAAAATC
GAAACAAATGCCAAATACCAAAAAGAACTTGAAAAACACGTCAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9FBU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.687

100

0.569
  amiA3 Streptococcus thermophilus LMD-9

55.235

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

54.78

100

0.551

Multiple sequence alignment