Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PPS_RS26240 Genome accession   NC_015733
Coordinates   5773666..5775156 (+) Length   496 a.a.
NCBI ID   WP_024087897.1    Uniprot ID   V9V727
Organism   Pseudomonas putida S16     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5768666..5780156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPS_RS26210 (PPS_5085) - 5769128..5769823 (+) 696 WP_013974747.1 HAD family hydrolase -
  PPS_RS26215 (PPS_5086) sutA 5770004..5770333 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  PPS_RS26220 (PPS_5087) - 5770764..5772095 (-) 1332 WP_044047175.1 ammonium transporter -
  PPS_RS26225 (PPS_5088) glnK 5772142..5772480 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PPS_RS26230 (PPS_5089) - 5772883..5773149 (+) 267 WP_015272255.1 accessory factor UbiK family protein -
  PPS_RS26235 (PPS_5090) - 5773150..5773503 (+) 354 WP_013974751.1 gamma-glutamylcyclotransferase family protein -
  PPS_RS26240 (PPS_5091) comM 5773666..5775156 (+) 1491 WP_024087897.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PPS_RS26245 (PPS_5092) - 5775379..5775747 (-) 369 WP_013974753.1 response regulator -
  PPS_RS26250 (PPS_5093) - 5775744..5776736 (-) 993 WP_013974754.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52782.49 Da        Isoelectric Point: 7.5221

>NTDB_id=41682 PPS_RS26240 WP_024087897.1 5773666..5775156(+) (comM) [Pseudomonas putida S16]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRCHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGNQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=41682 PPS_RS26240 WP_024087897.1 5773666..5775156(+) (comM) [Pseudomonas putida S16]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCAATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGTTGCCCGCAGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAACTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCACCGTATGCCGCCAACGGCCTGATCCTGCAGCAACGCCC
GTACCCAGACCTGAGCGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TTTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTTGCCAGCCGCTTGCCGGGGCTGCTGCCACCACTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATACAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCATCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTACCTGAGTTCGAGCGTCGCGTGCTGGAAGTGTTGCGCGAACCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTACGCTTCCCGGCCCGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGTAGCACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CAGGGCCATTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCATT
TCTCGACCTTGAGGGGTTGCGCTGCCATTGTGGGTTGGCGGCGGCGGACCAGGCCTGGTTGGAGGGGGCCTGTGAGCGGC
TGACCCTGTCGTTACGTGCGGCTCACCGGTTACTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAACCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9V727

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.194

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474

Multiple sequence alignment