Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3S93_RS13995 | Genome accession | NZ_CP047789 |
| Coordinates | 2797308..2797778 (+) | Length | 156 a.a. |
| NCBI ID | WP_024937184.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain UP_967 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2785250..2803477 | 2797308..2797778 | within | 0 |
Gene organization within MGE regions
Location: 2785250..2803477
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3S93_RS13895 (E3S93_13895) | - | 2785250..2786287 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| E3S93_RS13900 (E3S93_13900) | - | 2786478..2787191 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3S93_RS13905 (E3S93_13905) | - | 2787269..2787451 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| E3S93_RS13910 (E3S93_13910) | - | 2787651..2787836 (-) | 186 | WP_000100503.1 | hypothetical protein | - |
| E3S93_RS14100 | - | 2787833..2787979 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| E3S93_RS13915 (E3S93_13915) | - | 2788053..2788907 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| E3S93_RS13920 (E3S93_13920) | - | 2788919..2789635 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| E3S93_RS13925 (E3S93_13925) | - | 2789799..2790041 (+) | 243 | WP_000639926.1 | DUF739 family protein | - |
| E3S93_RS13930 (E3S93_13930) | - | 2790054..2790314 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| E3S93_RS13935 (E3S93_13935) | - | 2790338..2790876 (-) | 539 | Protein_2701 | hypothetical protein | - |
| E3S93_RS13940 (E3S93_13940) | - | 2790933..2791688 (+) | 756 | WP_001148342.1 | phage antirepressor KilAC domain-containing protein | - |
| E3S93_RS13945 (E3S93_13945) | - | 2791704..2791901 (+) | 198 | WP_001148862.1 | hypothetical protein | - |
| E3S93_RS13950 (E3S93_13950) | - | 2791888..2792268 (-) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| E3S93_RS13955 (E3S93_13955) | - | 2792323..2792643 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| E3S93_RS13960 (E3S93_13960) | - | 2792640..2792801 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| E3S93_RS13965 (E3S93_13965) | - | 2792896..2793198 (+) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| E3S93_RS13970 (E3S93_13970) | - | 2793203..2793463 (+) | 261 | WP_031824013.1 | DUF1108 family protein | - |
| E3S93_RS13975 (E3S93_13975) | - | 2793472..2793735 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| E3S93_RS13980 (E3S93_13980) | - | 2793744..2795687 (+) | 1944 | WP_160177754.1 | AAA family ATPase | - |
| E3S93_RS13985 (E3S93_13985) | - | 2795689..2796609 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| E3S93_RS13990 (E3S93_13990) | - | 2796690..2797307 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| E3S93_RS13995 (E3S93_13995) | ssbA | 2797308..2797778 (+) | 471 | WP_024937184.1 | single-stranded DNA-binding protein | Machinery gene |
| E3S93_RS14000 (E3S93_14000) | - | 2797808..2798692 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| E3S93_RS14005 (E3S93_14005) | - | 2798699..2798917 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| E3S93_RS14010 (E3S93_14010) | - | 2798926..2799330 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| E3S93_RS14015 (E3S93_14015) | - | 2799343..2799711 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| E3S93_RS14020 (E3S93_14020) | - | 2799715..2799957 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| E3S93_RS14025 (E3S93_14025) | - | 2800022..2800471 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| E3S93_RS14030 (E3S93_14030) | - | 2800468..2800977 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| E3S93_RS14035 (E3S93_14035) | - | 2800974..2801384 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| E3S93_RS14040 (E3S93_14040) | - | 2801377..2801913 (+) | 537 | WP_001066444.1 | dUTPase | - |
| E3S93_RS14045 (E3S93_14045) | - | 2801950..2802156 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| E3S93_RS14050 (E3S93_14050) | rinB | 2802153..2802302 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| E3S93_RS14055 (E3S93_14055) | - | 2802302..2802502 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| E3S93_RS14060 (E3S93_14060) | - | 2802530..2802946 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| E3S93_RS14065 (E3S93_14065) | - | 2803178..2803477 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17673.56 Da Isoelectric Point: 4.9628
>NTDB_id=416273 E3S93_RS13995 WP_024937184.1 2797308..2797778(+) (ssbA) [Staphylococcus aureus strain UP_967]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNTNDSQQDVYQQQVQQTRGQSQYPYNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=416273 E3S93_RS13995 WP_024937184.1 2797308..2797778(+) (ssbA) [Staphylococcus aureus strain UP_967]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATGTATATCAACAACAAGTACAACAAACACGTGGGCAATCGCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTTGCAAATGCTAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.497 |
100 |
0.641 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |