Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GVI67_RS21080 Genome accession   NZ_CP047729
Coordinates   4417805..4419325 (+) Length   506 a.a.
NCBI ID   WP_032673461.1    Uniprot ID   A0AAN4BSY8
Organism   Enterobacter hormaechei strain Eho-6     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4412805..4424325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI67_RS21055 (GVI67_21045) - 4414371..4415300 (-) 930 WP_006808638.1 branched-chain amino acid transaminase -
  GVI67_RS21060 (GVI67_21050) ilvM 4415319..4415582 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  GVI67_RS21065 (GVI67_21055) ilvG 4415579..4417225 (-) 1647 WP_006808639.1 acetolactate synthase 2 catalytic subunit -
  GVI67_RS21070 ilvX 4417228..4417278 (-) 51 WP_166792073.1 peptide IlvX -
  GVI67_RS21075 (GVI67_21060) ilvL 4417365..4417463 (-) 99 WP_001311244.1 ilv operon leader peptide -
  GVI67_RS21080 (GVI67_21065) comM 4417805..4419325 (+) 1521 WP_032673461.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GVI67_RS21085 (GVI67_21070) - 4419354..4419692 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  GVI67_RS21090 (GVI67_21075) hdfR 4419811..4420632 (+) 822 WP_017693775.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54675.66 Da        Isoelectric Point: 7.5493

>NTDB_id=415639 GVI67_RS21080 WP_032673461.1 4417805..4419325(+) (comM) [Enterobacter hormaechei strain Eho-6]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPDDLSDIMGQDQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQAGMKG
ESSAAVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=415639 GVI67_RS21080 WP_032673461.1 4417805..4419325(+) (comM) [Enterobacter hormaechei strain Eho-6]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCTATCGGCGTGAAGGCACCGCTTATCTCTGTGGAGGTTCATTTAAGCAA
TGGACTGCCCGGATTGACGCTGGTCGGCTTGCCAGAAACGACCGTTAAAGAGGCGAGGGATCGCGTACGCAGCGCAATTA
TTAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATCAATCTTGCGCCAGCAGATTTGCCTAAGGAGGGTGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAAGACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGCGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTCAGCCTTATCGCCGAAAAGGGATGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACATGAGCTTGCCGAACCGCAGGAGAATGACGAGGTGGCGCCAGATTCTCC
CGATGACCTCAGCGATATTATGGGCCAGGATCAGGGTAAGCGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAACGGCCTGCTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTAGTCAGTTCAACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGCGCGTCTCTTACCGCGATGGTAGGCGGAGGGTCGATCCCCGGACCGGGTGAAATTTCACTGGCGC
ACAACGGCATTCTGTTTCTGGATGAATTGCCAGAGTTTGAACGCCGCGTCCTGGATGCGTTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCTGCGATGAACCCTAG
CCCTACGGGACATTATCAGGGCAACCATAACCGCTGTACGCCGGAGCAGACCCTGCGCTATCTGAGTAAGCTGTCTGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCACCGCCCGGTCTGCTGAGACAAGCCGGTATGAAAGGG
GAAAGTTCAGCAGCGGTGCGCGAACGGGTTATTGCGGCGCAGGCGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACGCCGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTAGCCCGCACGGTCGCTGACGTGGAAGGCTGCCCCGGCATT
GAGAGGCGCCATTTGCAGGAGGCCTTGAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.333

100

0.437

Multiple sequence alignment