Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   GVI46_RS25715 Genome accession   NZ_CP047699
Coordinates   5016868..5017230 (-) Length   120 a.a.
NCBI ID   WP_013059785.1    Uniprot ID   -
Organism   Priestia megaterium strain 5-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5012356..5023598 5016868..5017230 within 0


Gene organization within MGE regions


Location: 5012356..5023598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI46_RS25705 - 5012356..5014986 (+) 2631 WP_013059783.1 DEAD/DEAH box helicase -
  GVI46_RS25710 - 5015284..5016330 (+) 1047 WP_097812340.1 LysM peptidoglycan-binding domain-containing protein -
  GVI46_RS25715 ssbB 5016868..5017230 (-) 363 WP_013059785.1 single-stranded DNA-binding protein Machinery gene
  GVI46_RS25720 - 5017327..5017764 (+) 438 WP_014457773.1 YwpF-like family protein -
  GVI46_RS25725 - 5018288..5018710 (+) 423 WP_097812339.1 helix-turn-helix domain-containing protein -
  GVI46_RS25730 fabZ 5018739..5019173 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  GVI46_RS25735 - 5019257..5020078 (-) 822 WP_013059789.1 flagellar hook-basal body protein -
  GVI46_RS25740 - 5020102..5020926 (-) 825 WP_029319385.1 flagellar hook-basal body protein -
  GVI46_RS25745 - 5021041..5022042 (-) 1002 WP_013059791.1 rod shape-determining protein -
  GVI46_RS25750 spoIIID 5022229..5022492 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  GVI46_RS25755 - 5022768..5023598 (-) 831 WP_028409695.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13486.22 Da        Isoelectric Point: 7.1647

>NTDB_id=415527 GVI46_RS25715 WP_013059785.1 5016868..5017230(-) (ssbB) [Priestia megaterium strain 5-3]
MINHIILVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=415527 GVI46_RS25715 WP_013059785.1 5016868..5017230(-) (ssbB) [Priestia megaterium strain 5-3]
ATGATTAACCATATTATTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAAAGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

88.333

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

88.333

0.458
  ssbB/cilA Streptococcus mitis NCTC 12261

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.509

88.333

0.367

Multiple sequence alignment