Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GVI46_RS25625 Genome accession   NZ_CP047699
Coordinates   4994713..4995210 (-) Length   165 a.a.
NCBI ID   WP_013059767.1    Uniprot ID   -
Organism   Priestia megaterium strain 5-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4989713..5000210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI46_RS25590 csrA 4990156..4990386 (-) 231 WP_013059760.1 carbon storage regulator CsrA -
  GVI46_RS25595 fliW 4990411..4990833 (-) 423 WP_013059761.1 flagellar assembly protein FliW -
  GVI46_RS25600 flgL 4990915..4991796 (-) 882 WP_098590673.1 flagellar hook-associated protein FlgL -
  GVI46_RS25605 flgK 4991799..4993322 (-) 1524 WP_098590674.1 flagellar hook-associated protein FlgK -
  GVI46_RS25610 - 4993341..4993802 (-) 462 WP_223269021.1 flagellar protein FlgN -
  GVI46_RS25615 flgM 4993824..4994078 (-) 255 WP_029319359.1 flagellar biosynthesis anti-sigma factor FlgM -
  GVI46_RS25620 - 4994238..4994651 (-) 414 WP_013059766.1 TIGR03826 family flagellar region protein -
  GVI46_RS25625 comFC 4994713..4995210 (-) 498 WP_013059767.1 ComF family protein Machinery gene
  GVI46_RS25630 - 4995402..4996892 (-) 1491 WP_257151527.1 DEAD/DEAH box helicase -
  GVI46_RS25635 - 4996990..4997835 (-) 846 WP_013059769.1 DegV family protein -
  GVI46_RS25640 - 4997942..4998379 (-) 438 WP_013059770.1 YaaR family protein -
  GVI46_RS25645 fliS 4998499..4998929 (-) 431 Protein_5094 flagellar export chaperone FliS -
  GVI46_RS25650 - 4999352..5000035 (-) 684 WP_013059772.1 response regulator -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19273.02 Da        Isoelectric Point: 8.0985

>NTDB_id=415524 GVI46_RS25625 WP_013059767.1 4994713..4995210(-) (comFC) [Priestia megaterium strain 5-3]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELISDNIEMPLVRCSGTKQSKKNRRSRLAERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAANCLQEAGAHSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=415524 GVI46_RS25625 WP_013059767.1 4994713..4995210(-) (comFC) [Priestia megaterium strain 5-3]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTCAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCTTTAGCG
CTAGCTGAACTGATCAGTGACAACATAGAAATGCCTCTTGTTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGGCAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ATATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACATTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.485
  comFC/cflB Streptococcus mitis NCTC 12261

36.095

100

0.37
  comFC/cflB Streptococcus pneumoniae Rx1

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.714

100

0.364

Multiple sequence alignment