Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H7798_RS06855 Genome accession   NZ_CP060638
Coordinates   1372263..1372928 (-) Length   221 a.a.
NCBI ID   WP_030126358.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY141     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1367263..1377928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7798_RS06850 (H7798_06880) hpf 1371635..1372183 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  H7798_RS06855 (H7798_06885) comFC/cflB 1372263..1372928 (-) 666 WP_030126358.1 ComF family protein Machinery gene
  H7798_RS06860 (H7798_06890) comFA/cflA 1372900..1374225 (-) 1326 WP_030126357.1 DEAD/DEAH box helicase Machinery gene
  H7798_RS06865 (H7798_06895) - 1374281..1374913 (+) 633 WP_030126356.1 YigZ family protein -
  H7798_RS06870 (H7798_06900) cysK 1375041..1375982 (+) 942 WP_030126355.1 cysteine synthase A -
  H7798_RS06875 (H7798_06905) - 1376000..1376377 (-) 378 WP_030126354.1 S1 RNA-binding domain-containing protein -
  H7798_RS06880 (H7798_06910) - 1376377..1377777 (-) 1401 WP_111717987.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25165.43 Da        Isoelectric Point: 9.4626

>NTDB_id=415523 H7798_RS06855 WP_030126358.1 1372263..1372928(-) (comFC/cflB) [Streptococcus pyogenes strain TSPY141]
MICLLCQQISQIPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSSGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=415523 H7798_RS06855 WP_030126358.1 1372263..1372928(-) (comFC/cflB) [Streptococcus pyogenes strain TSPY141]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAATACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTTCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTCAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae D39

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae R6

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407