Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HUG14_RS07760 Genome accession   NZ_CP060580
Coordinates   1593369..1593674 (+) Length   101 a.a.
NCBI ID   WP_052062168.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1588369..1598674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS07750 (HUG14_07750) - 1589815..1590129 (+) 315 WP_033900666.1 helix-turn-helix transcriptional regulator -
  HUG14_RS07755 (HUG14_07755) glf 1590268..1591404 (+) 1137 WP_109990755.1 UDP-galactopyranose mutase -
  HUG14_RS07760 (HUG14_07760) ssbB 1593369..1593674 (+) 306 WP_052062168.1 single-stranded DNA-binding protein Machinery gene
  HUG14_RS07765 (HUG14_07765) - 1593641..1593808 (+) 168 WP_155273359.1 hypothetical protein -
  HUG14_RS07770 (HUG14_07770) - 1594456..1594818 (-) 363 WP_033900923.1 hypothetical protein -
  HUG14_RS07775 (HUG14_07775) pepV 1595607..1597025 (+) 1419 WP_033900922.1 dipeptidase PepV -
  HUG14_RS07780 (HUG14_07780) acpS 1597128..1597487 (+) 360 WP_021468491.1 holo-ACP synthase -
  HUG14_RS07785 (HUG14_07785) alr 1597532..1598635 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11403.15 Da        Isoelectric Point: 10.1086

>NTDB_id=415355 HUG14_RS07760 WP_052062168.1 1593369..1593674(+) (ssbB) [Lactococcus lactis strain K_LL005]
MNNTHQIGHLSKDLELKKKPSNKSYVHFSIVVNRKSKNANGNCEADFIPCILWGEKAETLVKYASKVNRIGIDGELRTNP
IKTLQESNGLVWKFSSIILSF

Nucleotide


Download         Length: 306 bp        

>NTDB_id=415355 HUG14_RS07760 WP_052062168.1 1593369..1593674(+) (ssbB) [Lactococcus lactis strain K_LL005]
ATGAATAACACACACCAAATCGGACATTTGTCAAAAGACCTTGAACTTAAAAAGAAGCCTTCTAATAAAAGCTATGTTCA
TTTTTCGATTGTGGTAAACCGTAAGTCTAAAAATGCAAATGGCAATTGTGAAGCTGACTTTATTCCATGTATTCTTTGGG
GAGAAAAAGCAGAAACACTTGTGAAATATGCTTCAAAAGTAAATAGAATTGGAATTGATGGTGAATTACGAACTAATCCT
ATAAAGACTCTTCAGGAGTCAAACGGTTTAGTATGGAAGTTCTCGTCAATAATTTTGAGTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

52.564

77.228

0.406
  ssbB/cilA Streptococcus pneumoniae Rx1

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40.404

98.02

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

98.02

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.489

93.069

0.386
  ssbB/cilA Streptococcus mitis SK321

41.489

93.069

0.386

Multiple sequence alignment