Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GV243_RS23000 Genome accession   NZ_CP047679
Coordinates   4823846..4824376 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain 4201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4818846..4829376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV243_RS22965 (GV243_22965) - 4819182..4819589 (-) 408 WP_015379207.1 VOC family protein -
  GV243_RS22970 (GV243_22970) - 4819637..4820305 (-) 669 WP_160204654.1 glutathione S-transferase family protein -
  GV243_RS22975 (GV243_22975) - 4820302..4820745 (-) 444 WP_033644432.1 lipocalin-like domain-containing protein -
  GV243_RS22980 (GV243_22980) bhsA 4820941..4821201 (+) 261 WP_069100422.1 multiple stress resistance protein BhsA -
  GV243_RS22985 (GV243_22985) - 4821352..4822101 (+) 750 WP_033644429.1 3-oxoacyl-ACP reductase family protein -
  GV243_RS22990 (GV243_22990) - 4822365..4822577 (+) 213 WP_033644427.1 DUF1471 domain-containing protein -
  GV243_RS22995 (GV243_22995) - 4822804..4823760 (+) 957 WP_069100421.1 cyclase family protein -
  GV243_RS23000 (GV243_23000) ssb 4823846..4824376 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GV243_RS23005 (GV243_23005) uvrA 4824654..4827482 (+) 2829 WP_033644422.1 excinuclease ABC subunit UvrA -
  GV243_RS23010 (GV243_23010) - 4827811..4828617 (+) 807 WP_033651345.1 MipA/OmpV family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=415263 GV243_RS23000 WP_004936793.1 4823846..4824376(-) (ssb) [Serratia marcescens strain 4201]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=415263 GV243_RS23000 WP_004936793.1 4823846..4824376(-) (ssb) [Serratia marcescens strain 4201]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAAGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGTTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAACAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGTCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment