Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   F7308_RS02705 Genome accession   NC_015696
Coordinates   539485..540993 (+) Length   502 a.a.
NCBI ID   WP_013922316.1    Uniprot ID   -
Organism   Francisella salina     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 534485..545993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7308_RS02690 (F7308_0542) - 536157..537746 (+) 1590 WP_004286963.1 NuoM family protein -
  F7308_RS02695 (F7308_0543) - 537762..539213 (+) 1452 WP_013922315.1 NADH-quinone oxidoreductase subunit N -
  F7308_RS02700 (F7308_0544) - 539289..539483 (+) 195 WP_012280351.1 accessory factor UbiK family protein -
  F7308_RS02705 (F7308_0545) comM 539485..540993 (+) 1509 WP_013922316.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  F7308_RS02710 (F7308_0546) hemE 541026..542060 (+) 1035 WP_013922317.1 uroporphyrinogen decarboxylase -
  F7308_RS02720 (F7308_0547) rimP 542275..542727 (+) 453 WP_013922318.1 ribosome maturation factor RimP -
  F7308_RS02725 (F7308_0548) nusA 542743..544212 (+) 1470 WP_013922319.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55030.72 Da        Isoelectric Point: 8.2711

>NTDB_id=41514 F7308_RS02705 WP_013922316.1 539485..540993(+) (comM) [Francisella salina]
MSLAILKSRAQLGIEAPLVSIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQINIVRNVGDFEFAGELSLGGELRKISSAIPMAIKCVANNKKLVIPIHNEKEIALVEDVCAYSFET
LKEIVGFLSGDDKTSVEQLQEIDFERLYSDLEDVKGQYQARRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLNK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFNRKVLEVLREPLE
TGVVNISRAKCQVEYPANFQLIAAMNPCPCGYLGSQYKECSDSIQSIKRYQSKLSGPLLDRIDLQVEVLELAKEDLTNQE
LRGEKSSIIRERVKKARDIQITRQGKINSMLTSKELDEVCDLDEESKKMLTLAIEKLGLSARGYYKILKVARTIADLSGC
KKIEKLAIQEAIGYRKMDKFFK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=41514 F7308_RS02705 WP_013922316.1 539485..540993(+) (comM) [Francisella salina]
ATGTCTTTAGCAATTCTAAAAAGTCGAGCTCAATTGGGTATTGAAGCACCGCTTGTCTCGATAGAAGTTCATTTGTCAAA
TGGTCTGCCTGGCTTATCAATAGTAGGCTTACCAGAGGCAGCTGTCAAAGAGAGCAAAGATCGTGTTAGAAGTGCTATCA
TAAACTCGGGATTTAATTTTCCAAATAAACGTATCACAATTAATCTTGCCCCTGCAGACTTACCTAAGAGTAGTGGAAGA
TTTGATTTGCCTATAGCATTAGGTATTTTATATGCATCAGGCCAAATAAATATTGTTAGAAATGTTGGAGATTTCGAGTT
TGCTGGAGAGTTGTCTCTAGGTGGTGAGCTTAGGAAAATTTCTAGTGCGATACCGATGGCTATTAAGTGTGTTGCGAATA
ACAAAAAACTTGTGATACCTATTCATAATGAAAAAGAGATTGCTTTAGTTGAAGATGTTTGTGCTTATTCTTTTGAGACT
CTAAAAGAAATCGTAGGTTTTTTATCTGGTGACGATAAAACTTCGGTAGAGCAATTACAAGAAATTGACTTTGAGAGACT
GTATTCTGATTTAGAAGATGTAAAAGGACAATATCAGGCTAGACGCGCTTTGGAAATTGCAGCAGCAGGTGGTCATAATA
TTCTTTTAGTTGGTCCACCGGGAACTGGTAAGACTATGCTTGCTAGTAGGCTTAATTCTATTTTGCCACCATTAAACAAG
AAAGAAGCCCTTTCATCAGCGATGATTGCTTCAATTAAAGGTGAATCAGGGATAGCAGAAAGTTTTTATAAAAGACCATT
TCGTCATCCTCATCATACTTCTTCAGGTGTTTCTTTGGTTGGAGGTGGTAGCAATCCTATGCCTGGTGAAATATCTTTAG
CTCATAATGGCGTGTTATTCCTTGATGAGTTGCCAGAGTTTAATCGCAAAGTTTTAGAAGTTTTAAGAGAGCCTCTTGAG
ACTGGAGTTGTAAATATTTCTAGAGCAAAGTGTCAGGTAGAGTATCCAGCGAACTTCCAATTGATAGCTGCTATGAATCC
TTGTCCGTGTGGGTATTTAGGATCGCAGTATAAAGAGTGCTCAGATTCAATTCAATCAATTAAAAGGTATCAAAGTAAGC
TTTCAGGACCTCTTTTAGACAGAATTGATTTACAAGTTGAGGTTCTTGAGCTAGCAAAAGAGGATCTAACAAATCAAGAA
TTAAGAGGTGAAAAAAGTAGTATAATTAGGGAGCGAGTTAAAAAGGCAAGAGATATCCAGATCACTAGGCAAGGTAAAAT
AAATTCAATGCTAACAAGTAAAGAGCTAGACGAGGTTTGTGACCTTGATGAAGAAAGTAAAAAAATGCTAACACTAGCTA
TAGAAAAGCTTGGACTATCAGCCAGAGGGTACTATAAAATACTCAAAGTTGCTCGAACAATAGCAGATTTAAGCGGATGC
AAGAAAATTGAAAAACTAGCAATTCAAGAAGCTATAGGTTACAGAAAAATGGACAAGTTTTTTAAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.362

100

0.53
  comM Glaesserella parasuis strain SC1401

52.071

100

0.526
  comM Vibrio campbellii strain DS40M4

51.984

100

0.522
  comM Haemophilus influenzae Rd KW20

51.085

100

0.516
  comM Legionella pneumophila str. Paris

51.205

99.203

0.508
  comM Legionella pneumophila strain ERS1305867

51.205

99.203

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.2

99.602

0.49

Multiple sequence alignment