Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GU333_RS09660 Genome accession   NZ_CP047630
Coordinates   1966597..1967106 (-) Length   169 a.a.
NCBI ID   WP_061775366.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961597..1972106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS09625 (GU333_09590) - 1961949..1962203 (-) 255 WP_167842410.1 DUF1912 family protein -
  GU333_RS09630 (GU333_09595) - 1962247..1962744 (-) 498 WP_167842411.1 GNAT family N-acetyltransferase -
  GU333_RS09635 (GU333_09600) rlmD 1962741..1964078 (-) 1338 WP_167842412.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  GU333_RS09640 (GU333_09605) recX 1964115..1964909 (+) 795 WP_167842413.1 recombination regulator RecX -
  GU333_RS09645 (GU333_09610) - 1964936..1965649 (-) 714 WP_167842414.1 pseudouridine synthase -
  GU333_RS09650 (GU333_09615) - 1965815..1966126 (+) 312 WP_061775367.1 DUF960 domain-containing protein -
  GU333_RS09655 (GU333_09620) rpsR 1966303..1966548 (-) 246 WP_003140392.1 30S ribosomal protein S18 -
  GU333_RS09660 (GU333_09625) ssb 1966597..1967106 (-) 510 WP_061775366.1 single-stranded DNA-binding protein Machinery gene
  GU333_RS09665 (GU333_09630) rpsF 1967143..1967442 (-) 300 WP_061775365.1 30S ribosomal protein S6 -
  GU333_RS09670 (GU333_09635) - 1967638..1967949 (-) 312 WP_167842415.1 hypothetical protein -
  GU333_RS09675 (GU333_09640) - 1968091..1968477 (-) 387 WP_209451889.1 hypothetical protein -
  GU333_RS09680 (GU333_09645) - 1968446..1970020 (-) 1575 WP_167842417.1 hypothetical protein -
  GU333_RS09685 (GU333_09650) - 1970013..1970366 (-) 354 WP_167842418.1 hypothetical protein -
  GU333_RS09690 (GU333_09655) - 1970991..1971803 (+) 813 WP_167842419.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18373.19 Da        Isoelectric Point: 4.8895

>NTDB_id=414751 GU333_RS09660 WP_061775366.1 1966597..1967106(-) (ssb) [Lactococcus raffinolactis strain Lr_18_12S]
MINNVVLVGRLTKDVELRYTPANQAVATFTLAVNRAFKNANGEREADFINVVIWRQAAENLANWAKKGALLGVTGRIQTR
NYENAQGQRVYVTEVVADNFQMLESRSAREGGQQGGGYTPSQSQPTNSNFGGNQPSQTQSSPATPDFGRDSDPFSGGTPM
NLSDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=414751 GU333_RS09660 WP_061775366.1 1966597..1967106(-) (ssb) [Lactococcus raffinolactis strain Lr_18_12S]
ATGATTAATAATGTTGTTTTAGTAGGTCGTTTGACCAAAGACGTTGAACTTCGTTACACACCTGCCAATCAAGCAGTGGC
TACTTTTACCCTTGCGGTTAATCGTGCCTTCAAGAATGCTAATGGTGAGCGTGAAGCGGATTTCATTAATGTTGTCATCT
GGCGTCAAGCTGCAGAAAATCTAGCAAATTGGGCGAAAAAAGGTGCGCTTCTGGGCGTTACTGGTCGTATCCAAACGCGT
AATTATGAGAATGCCCAAGGTCAACGTGTTTACGTGACTGAAGTGGTTGCTGATAATTTCCAAATGTTAGAAAGTCGTAG
CGCGCGCGAAGGTGGTCAACAAGGTGGTGGTTACACACCTTCACAGTCTCAACCTACAAACTCAAACTTCGGTGGCAATC
AGCCGTCACAAACTCAGAGCTCACCTGCCACTCCAGACTTTGGCCGCGATAGCGATCCGTTTTCTGGTGGCACACCCATG
AACTTGAGTGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.429

100

0.615
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.114

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.722

0.379
  ssb Vibrio cholerae strain A1552

34.239

100

0.373
  ssb Glaesserella parasuis strain SC1401

32.632

100

0.367

Multiple sequence alignment