Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GU333_RS07950 Genome accession   NZ_CP047630
Coordinates   1611773..1612762 (-) Length   329 a.a.
NCBI ID   WP_061775229.1    Uniprot ID   A0AAE6YMW8
Organism   Lactococcus raffinolactis strain Lr_18_12S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1606773..1617762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU333_RS07935 (GU333_07910) pepF 1607370..1609166 (-) 1797 WP_167842293.1 oligoendopeptidase F Regulator
  GU333_RS07940 (GU333_07915) mmuM 1609315..1610232 (-) 918 WP_096039406.1 homocysteine S-methyltransferase -
  GU333_RS07945 (GU333_07920) - 1610210..1611580 (-) 1371 WP_096040497.1 amino acid permease -
  GU333_RS07950 (GU333_07925) coiA 1611773..1612762 (-) 990 WP_061775229.1 competence protein CoiA family protein Machinery gene
  GU333_RS07955 (GU333_07930) - 1612839..1613804 (-) 966 WP_061775228.1 Gfo/Idh/MocA family oxidoreductase -
  GU333_RS07960 (GU333_07935) - 1613936..1614556 (-) 621 WP_244165982.1 C40 family peptidase -
  GU333_RS07965 (GU333_07940) - 1614670..1616340 (-) 1671 WP_167838906.1 formate--tetrahydrofolate ligase -
  GU333_RS07970 (GU333_07945) - 1616521..1617009 (-) 489 WP_096039423.1 MepB family protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 38717.29 Da        Isoelectric Point: 6.9897

>NTDB_id=414742 GU333_RS07950 WP_061775229.1 1611773..1612762(-) (coiA) [Lactococcus raffinolactis strain Lr_18_12S]
MLVAVNEAEQIINLLEFSKSDLTELVGQFLRCPACKSQVRLKNGHVKMPHFAHVNLAACQYYSENESLQHLTLKKRLYHW
FKQTEQVKIEHFLPELQQTPDLLVNETIAIEIQCSHLSIQRLRERTETYRAHGYTVLWLMGKDLWLGQHLTQLKQQLLYL
TQNAGFYYWELDLQREKIRLNYLCHEDLIGRLHYLQREFSFDVGNLLEVLRTPFAASSAKLTDQLSQDIPAFIRSQLYYQ
NPKWLKIQEKYYQNGQNLMTFKNFPIKLYPIGLNLLTHQFEGVVEPDFCQITSDISRYYHHFLAYPQDDGVYPPGFYARA
ETGDGDCKS

Nucleotide


Download         Length: 990 bp        

>NTDB_id=414742 GU333_RS07950 WP_061775229.1 1611773..1612762(-) (coiA) [Lactococcus raffinolactis strain Lr_18_12S]
ATGCTAGTTGCAGTGAATGAAGCAGAACAAATCATCAATTTACTAGAATTTAGCAAGTCGGACCTTACTGAATTGGTAGG
TCAATTTTTGCGTTGTCCTGCTTGCAAAAGTCAGGTACGCTTGAAAAATGGTCATGTAAAAATGCCCCATTTTGCTCACG
TAAATTTAGCAGCCTGTCAATATTATTCGGAGAACGAAAGCCTGCAGCACTTAACCTTAAAAAAACGTTTATATCACTGG
TTCAAGCAAACAGAGCAGGTCAAAATCGAGCATTTTTTACCTGAGTTACAGCAGACGCCTGACTTACTGGTTAATGAAAC
GATTGCGATTGAAATTCAATGCAGTCACCTGTCTATTCAGAGACTGCGTGAGCGGACAGAAACCTATCGAGCTCATGGCT
ACACCGTCCTCTGGCTCATGGGAAAGGATTTATGGTTGGGTCAGCATTTGACGCAACTCAAGCAACAGTTACTCTATTTA
ACCCAGAATGCTGGTTTTTACTATTGGGAGTTGGATTTGCAGCGTGAAAAAATCCGCCTCAACTATCTGTGCCATGAAGA
TTTAATAGGGCGTTTGCATTATTTACAGCGTGAATTTTCCTTCGATGTAGGGAATTTACTTGAGGTGCTTCGAACGCCAT
TTGCGGCAAGCTCAGCCAAATTGACTGACCAGTTATCGCAAGATATTCCAGCATTTATCAGGTCTCAGCTTTATTATCAG
AATCCCAAATGGTTGAAAATTCAAGAAAAGTATTATCAGAATGGGCAAAATTTGATGACGTTCAAAAACTTCCCTATTAA
GTTATATCCGATTGGCTTGAATCTCTTAACGCACCAGTTCGAAGGCGTTGTCGAGCCTGACTTTTGTCAAATTACAAGCG
ATATCAGTCGCTATTATCACCATTTTCTGGCTTATCCGCAGGATGATGGGGTTTATCCGCCGGGATTTTATGCTAGGGCT
GAGACAGGTGATGGAGATTGTAAAAGCTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

52.174

97.872

0.511
  coiA Streptococcus mitis NCTC 12261

44.753

98.48

0.441
  coiA Streptococcus pneumoniae TIGR4

42.901

98.48

0.422
  coiA Streptococcus pneumoniae Rx1

42.901

98.48

0.422
  coiA Streptococcus pneumoniae D39

42.901

98.48

0.422
  coiA Streptococcus pneumoniae R6

42.901

98.48

0.422

Multiple sequence alignment